Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 197-660 |
| Cow position: | chr12:11099739-11100219 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 87, 180 |
| Conread position: | 197-687 |
| Cow position: | chr12:3362448-3362944 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 89 |
| Conread position: | 197-687 |
| Cow position: | chr12:22204199-22203703 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 197-687 |
| Cow position: | chr12:42606738-42606240 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 166 |
| Conread position: | 198-687 |
| Cow position: | chr12:6405126-6404627 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 205-645 |
| Cow position: | chr12:23161389-23160945 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 223, 38 |
| Conread position: | 206-356 |
| Cow position: | chr12:3209493-3209641 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 207-657 |
| Cow position: | chr12:32655074-32655525 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 308 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 220, 12 |
| Conread position: | 207-660 |
| Cow position: | chr12:19870411-19870863 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 240, 132 |
| Conread position: | 207-660 |
| Cow position: | chr12:27931386-27930921 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr12:34174865-34175326 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 157 |
| Conread position: | 207-677 |
| Cow position: | chr12:21253063-21252584 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 218, 105 |
| Conread position: | 207-687 |
| Cow position: | chr12:8676567-8676073 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-687 |
| Cow position: | chr12:14660827-14660342 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-687 |
| Cow position: | chr12:21429531-21430020 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 156 |
| Conread position: | 207-687 |
| Cow position: | chr12:48471364-48470885 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 162 |
| Conread position: | 207-723 |
| Cow position: | chr12:27854442-27853915 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 162 |
| Conread position: | 208-687 |
| Cow position: | chr12:37560537-37561012 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 113 |
| Conread position: | 210-687 |
| Cow position: | chr12:20461704-20461221 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 210-700 |
| Cow position: | chr12:21210190-21210690 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 205 |
| Conread position: | 211-660 |
| Cow position: | chr12:42858007-42857554 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 221-359 |
| Cow position: | chr12:17980252-17980383 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 228-660 |
| Cow position: | chr12:22519436-22518999 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 135 |
| Conread position: | 232-660 |
| Cow position: | chr12:17967361-17967786 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 235-368 |
| Cow position: | chr12:11581552-11581686 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 235-455 |
| Cow position: | chr12:466727-466514 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 237-687 |
| Cow position: | chr12:21428040-21427581 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 132 |
| Conread position: | 256-660 |
| Cow position: | chr12:32065415-32065844 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 89, 107 |
| Conread position: | 294-687 |
| Cow position: | chr12:25267802-25267400 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 365-660 |
| Cow position: | chr12:18465545-18465844 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 384-687 |
| Cow position: | chr12:24994281-24993970 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 401-686 |
| Cow position: | chr12:21128757-21129043 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 459-641 |
| Cow position: | chr12:2283467-2283658 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 459-660 |
| Cow position: | chr12:25098698-25098496 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 459-660 |
| Cow position: | chr12:25261742-25261536 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 459-676 |
| Cow position: | chr12:23257962-23257753 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 459-687 |
| Cow position: | chr12:21091950-21091726 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 214, 37 |
| Conread position: | 459-687 |
| Cow position: | chr12:23139397-23139163 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 460-687 |
| Cow position: | chr12:1971809-1972033 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 201, 13 |
| Conread position: | 462-654 |
| Cow position: | chr12:15950026-15949837 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 463-660 |
| Cow position: | chr12:20996319-20996122 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-660 |
| Cow position: | chr12:30685513-30685718 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 133 |
| Conread position: | 465-651 |
| Cow position: | chr12:7863099-7862906 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 510-660 |
| Cow position: | chr12:33043202-33043356 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 548-660 |
| Cow position: | chr12:3179237-3179349 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-660 |
| Cow position: | chr12:24031100-24030988 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-660 |
| Cow position: | chr12:25144124-25144235 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.