Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 170-661
Cow position: chr13:19128368-19127880 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 310
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 240, 55

Conread position: 197-608
Cow position: chr13:43981794-43981386 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 211, 163

Conread position: 197-657
Cow position: chr13:34087762-34088224 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 299
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 61, 87

Conread position: 197-687
Cow position: chr13:13326220-13326712 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 21

Conread position: 197-687
Cow position: chr13:21838914-21838421 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 166

Conread position: 197-688
Cow position: chr13:32984051-32983550 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 172

Conread position: 198-660
Cow position: chr13:50110747-50111222 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 451

Conread position: 204-660
Cow position: chr13:11763333-11762877 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 126

Conread position: 206-686
Cow position: chr13:22184038-22183542 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 24

Conread position: 207-359
Cow position: chr13:20540953-20540799 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 207-367
Cow position: chr13:60648502-60648342 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 207-370
Cow position: chr13:11388300-11388462 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 154, 0

Conread position: 207-370
Cow position: chr13:21697567-21697730 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 207-370
Cow position: chr13:34324275-34324112 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 207-641
Cow position: chr13:34041031-34040592 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 290
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr13:728532-728993 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 78

Conread position: 207-660
Cow position: chr13:4942688-4943148 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 65

Conread position: 207-660
Cow position: chr13:6358427-6358886 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 156

Conread position: 207-660
Cow position: chr13:11797404-11796945 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 257

Conread position: 207-660
Cow position: chr13:14401805-14401341 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 308
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr13:32735889-32735431 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 77

Conread position: 207-660
Cow position: chr13:33524653-33524196 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 303
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 203, 162

Conread position: 207-665
Cow position: chr13:34764537-34764072 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 309
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 126, 20

Conread position: 207-686
Cow position: chr13:34938741-34939226 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 329
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 252, 78

Conread position: 207-687
Cow position: chr13:5500696-5500206 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 171

Conread position: 207-687
Cow position: chr13:13901170-13901656 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 207-687
Cow position: chr13:30239630-30240126 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 320
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 149

Conread position: 207-687
Cow position: chr13:35758584-35759070 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr13:49974969-49975468 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 93

Conread position: 208-660
Cow position: chr13:31508211-31508668 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 108

Conread position: 208-687
Cow position: chr13:47575396-47575888 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 336
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 254, 113

Conread position: 208-690
Cow position: chr13:34869276-34869756 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 170

Conread position: 209-647
Cow position: chr13:36348831-36348399 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 307
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 240, 112

Conread position: 210-648
Cow position: chr13:6640697-6641122 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 282
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 263, 106

Conread position: 210-687
Cow position: chr13:30304503-30304988 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 159

Conread position: 211-641
Cow position: chr13:31611004-31610573 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 273
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 73

Conread position: 211-657
Cow position: chr13:48358935-48359370 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 288
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 217, 89

Conread position: 211-660
Cow position: chr13:34343213-34343671 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 73

Conread position: 211-660
Cow position: chr13:57025141-57025614 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 98, 106

Conread position: 214-687
Cow position: chr13:43590627-43591102 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 327
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 194, 102

Conread position: 221-649
Cow position: chr13:14177538-14177114 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 287
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 120, 128

Conread position: 222-640
Cow position: chr13:31729584-31729163 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 287
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 186, 25

Conread position: 223-659
Cow position: chr13:32547824-32548249 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 292
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 61

Conread position: 223-660
Cow position: chr13:15449828-15449410 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 74

Conread position: 232-658
Cow position: chr13:5624419-5623988 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 285
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 196, 131

Conread position: 235-658
Cow position: chr13:34030928-34031353 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 137, 86

Conread position: 237-660
Cow position: chr13:34050039-34050465 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 81

Conread position: 239-660
Cow position: chr13:42090358-42089933 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 273
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 175, 133

Conread position: 261-660
Cow position: chr13:11246798-11246390 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 289
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 78, 93

Conread position: 262-687
Cow position: chr13:3760271-3759837 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 107

Conread position: 268-647
Cow position: chr13:21907835-21907428 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 93

Conread position: 294-687
Cow position: chr13:11388597-11388997 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 148, 69

Conread position: 381-660
Cow position: chr13:10369543-10369260 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 93, 79

Conread position: 384-661
Cow position: chr13:14523673-14523386 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 62, 188

Conread position: 386-687
Cow position: chr13:53553064-53552736 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 64, 136

Conread position: 397-608
Cow position: chr13:21091000-21090783 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 106

Conread position: 439-687
Cow position: chr13:17309954-17310208 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 156
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 97, 0

Conread position: 454-660
Cow position: chr13:60650260-60650480 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 458-656
Cow position: chr13:15884510-15884313 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 20

Conread position: 459-655
Cow position: chr13:28095629-28095429 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 459-660
Cow position: chr13:4485419-4485622 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 84, 57

Conread position: 459-660
Cow position: chr13:6666581-6666376 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr13:15922900-15922695 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr13:16252959-16252756 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 20

Conread position: 459-660
Cow position: chr13:18331550-18331344 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr13:34096396-34096195 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 459-660
Cow position: chr13:34906959-34906755 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 41

Conread position: 459-660
Cow position: chr13:49494621-49494416 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 81, 0

Conread position: 459-660
Cow position: chr13:60648249-60648042 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr13:61084473-61084678 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 35, 40

Conread position: 459-660
Cow position: chr13:61952818-61953021 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 78, 133

Conread position: 459-687
Cow position: chr13:16921016-16921250 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr13:23454993-23455227 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 79, 0

Conread position: 459-687
Cow position: chr13:49613978-49613744 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr13:54239883-54239648 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 79, 0

Conread position: 459-688
Cow position: chr13:29225522-29225299 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 200, 61

Conread position: 460-660
Cow position: chr13:19130626-19130426 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 134, 94

Conread position: 460-660
Cow position: chr13:33334762-33334559 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 73, 0

Conread position: 460-687
Cow position: chr13:15558899-15559132 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 83, 0

Conread position: 462-658
Cow position: chr13:24236006-24236207 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 462-660
Cow position: chr13:20540272-20540076 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 86, 9

Conread position: 462-660
Cow position: chr13:26845779-26845974 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 462-661
Cow position: chr13:21058230-21058432 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 76, 108

Conread position: 462-661
Cow position: chr13:59979701-59979498 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 0

Conread position: 462-687
Cow position: chr13:679336-679569 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 140
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 462-687
Cow position: chr13:32923572-32923343 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 185

Conread position: 463-660
Cow position: chr13:25693119-25693323 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 466-687
Cow position: chr13:3652694-3652463 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 468-687
Cow position: chr13:19636712-19636938 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 149

Conread position: 475-688
Cow position: chr13:54311594-54311807 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 185, 73

Conread position: 476-660
Cow position: chr13:1048450-1048272 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 43

Conread position: 482-660
Cow position: chr13:31732366-31732189 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 484-660
Cow position: chr13:15280209-15280029 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 59, 0

Conread position: 498-656
Cow position: chr13:17330234-17330069 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 510-688
Cow position: chr13:34510197-34510013 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 525-650
Cow position: chr13:17481533-17481408 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 535-660
Cow position: chr13:20573456-20573331 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 535-688
Cow position: chr13:10373699-10373852 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 113

Conread position: 547-660
Cow position: chr13:562740-562627 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 548-660
Cow position: chr13:30470715-30470603 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 548-660
Cow position: chr13:50192178-50192066 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 563-687
Cow position: chr13:24667248-24667122 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 116, 0

Show alignments to all cow chromosomes.