Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 141-660
Cow position: chr14:45082225-45082754 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 345
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 8, 15

Conread position: 187-658
Cow position: chr14:5075100-5075572 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 47

Conread position: 196-687
Cow position: chr14:2287434-2287931 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 31

Conread position: 197-586
Cow position: chr14:45677919-45677527 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 112

Conread position: 197-646
Cow position: chr14:16342733-16342277 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 181

Conread position: 197-660
Cow position: chr14:23256193-23255722 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 166

Conread position: 197-660
Cow position: chr14:34998290-34998754 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 308
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 37, 89

Conread position: 197-676
Cow position: chr14:38814325-38813829 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 169

Conread position: 197-676
Cow position: chr14:47939809-47939318 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 21

Conread position: 197-687
Cow position: chr14:48826443-48826938 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 324
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 89, 98

Conread position: 205-437
Cow position: chr14:37454770-37454552 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 205-676
Cow position: chr14:34861805-34862275 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 143

Conread position: 207-399
Cow position: chr14:12124004-12123811 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 158, 0

Conread position: 207-558
Cow position: chr14:45027823-45027470 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 231
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 201, 86

Conread position: 207-599
Cow position: chr14:45670857-45670446 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 178, 154

Conread position: 207-650
Cow position: chr14:45086402-45086847 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 287
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 20

Conread position: 207-656
Cow position: chr14:19461103-19460660 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 283
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 159, 83

Conread position: 207-659
Cow position: chr14:20783646-20784104 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr14:1659633-1660096 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-660
Cow position: chr14:11476114-11475655 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 26

Conread position: 207-660
Cow position: chr14:12611588-12612029 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 293
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 153, 0

Conread position: 207-660
Cow position: chr14:12741858-12741410 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 308
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 203, 74

Conread position: 207-660
Cow position: chr14:13780130-13780587 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 303
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr14:16918537-16918094 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 303
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 248, 77

Conread position: 207-660
Cow position: chr14:16999879-16999413 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 77

Conread position: 207-660
Cow position: chr14:19327084-19326625 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr14:30660893-30660436 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 303
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 119, 145

Conread position: 207-660
Cow position: chr14:43559415-43559867 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 21

Conread position: 207-660
Cow position: chr14:44290242-44290701 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 300
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 93, 77

Conread position: 207-660
Cow position: chr14:44553017-44553466 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 302
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 160, 103

Conread position: 207-661
Cow position: chr14:29223906-29223435 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 305
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 102, 218

Conread position: 207-686
Cow position: chr14:751745-752231 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 22

Conread position: 207-687
Cow position: chr14:191223-191716 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 77

Conread position: 207-687
Cow position: chr14:5530236-5530725 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr14:13304131-13304624 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr14:13862919-13862437 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 21

Conread position: 207-687
Cow position: chr14:16808144-16807656 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 156

Conread position: 207-687
Cow position: chr14:17490160-17489673 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 77

Conread position: 207-687
Cow position: chr14:22030271-22029805 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 312
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr14:29046494-29046012 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-687
Cow position: chr14:32448132-32448623 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr14:37225332-37225823 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 209-687
Cow position: chr14:48601169-48600686 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 320
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 201, 19

Conread position: 210-660
Cow position: chr14:7473533-7473988 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 308
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 85, 74

Conread position: 211-660
Cow position: chr14:33712260-33712715 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 282
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 149, 135

Conread position: 214-649
Cow position: chr14:46390444-46390003 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 213

Conread position: 221-660
Cow position: chr14:17965498-17965941 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 283
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 12

Conread position: 221-687
Cow position: chr14:33392733-33392257 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 151

Conread position: 221-688
Cow position: chr14:30704971-30704479 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 227-579
Cow position: chr14:46403152-46403508 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 235, 95

Conread position: 227-660
Cow position: chr14:44480291-44480715 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 264
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 231-688
Cow position: chr14:42122375-42121914 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 132

Conread position: 233-661
Cow position: chr14:13462661-13463079 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 109

Conread position: 236-660
Cow position: chr14:35384416-35383991 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 275
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 192, 107

Conread position: 237-641
Cow position: chr14:45710531-45710118 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 268
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 171, 141

Conread position: 240-687
Cow position: chr14:44690391-44690842 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 294
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 49, 44

Conread position: 246-660
Cow position: chr14:29774905-29774479 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 280
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 136

Conread position: 248-660
Cow position: chr14:8413150-8413554 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 285
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 201, 68

Conread position: 251-709
Cow position: chr14:33490059-33490520 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 310
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 177, 65

Conread position: 259-659
Cow position: chr14:50142206-50142611 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 151, 132

Conread position: 295-460
Cow position: chr14:30761660-30761498 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 0

Conread position: 358-658
Cow position: chr14:38228387-38228077 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 39

Conread position: 359-654
Cow position: chr14:20564337-20564048 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 97

Conread position: 384-660
Cow position: chr14:46503038-46503327 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 397-688
Cow position: chr14:35364503-35364196 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 68, 160

Conread position: 408-649
Cow position: chr14:8898668-8898926 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 454-687
Cow position: chr14:17688277-17688513 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 95, 0

Conread position: 457-654
Cow position: chr14:29581554-29581748 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 5

Conread position: 459-642
Cow position: chr14:9513682-9513492 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 25

Conread position: 459-660
Cow position: chr14:13579790-13579995 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 84, 0

Conread position: 459-660
Cow position: chr14:16201738-16201537 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 22

Conread position: 459-660
Cow position: chr14:16271893-16271688 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr14:27066321-27066123 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 17, 27

Conread position: 459-686
Cow position: chr14:2295701-2295934 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 77, 185

Conread position: 459-687
Cow position: chr14:15274117-15273884 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 459-687
Cow position: chr14:30582688-30582455 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 79, 90

Conread position: 459-687
Cow position: chr14:30594921-30594687 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 33, 24

Conread position: 459-687
Cow position: chr14:45163654-45163886 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 166

Conread position: 459-687
Cow position: chr14:48252894-48252661 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 84, 112

Conread position: 459-690
Cow position: chr14:50112792-50113034 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 61, 0

Conread position: 460-651
Cow position: chr14:26035626-26035818 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 460-660
Cow position: chr14:22361435-22361632 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 37, 0

Conread position: 460-660
Cow position: chr14:44380780-44380986 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 83, 0

Conread position: 460-660
Cow position: chr14:45207994-45208199 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 460-688
Cow position: chr14:30761476-30761245 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 76, 28

Conread position: 462-660
Cow position: chr14:37454385-37454192 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 462-688
Cow position: chr14:41476190-41476420 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 109

Conread position: 464-661
Cow position: chr14:47926516-47926714 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 43

Conread position: 464-675
Cow position: chr14:20704968-20705171 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 465-660
Cow position: chr14:44235172-44235372 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 467-676
Cow position: chr14:40343760-40343965 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 78, 158

Conread position: 473-687
Cow position: chr14:46221524-46221744 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 474-688
Cow position: chr14:14667675-14667461 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 187, 49

Conread position: 484-687
Cow position: chr14:36908746-36908538 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 488-675
Cow position: chr14:10045672-10045494 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 515-660
Cow position: chr14:40788405-40788260 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 516-661
Cow position: chr14:3476651-3476801 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 104

Conread position: 521-655
Cow position: chr14:41443835-41443969 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 535-687
Cow position: chr14:44782465-44782311 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 143, 0

Conread position: 535-688
Cow position: chr14:547558-547711 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 125, 39

Conread position: 548-687
Cow position: chr14:41411273-41411414 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 550-687
Cow position: chr14:45027432-45027293 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 0

Conread position: 552-687
Cow position: chr14:38090444-38090581 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 556-688
Cow position: chr14:40167128-40166994 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 121, 0

Show alignments to all cow chromosomes.