Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 188-359
Cow position: chr17:22133653-22133826 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 7

Conread position: 197-370
Cow position: chr17:3654891-3654719 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 164, 0

Conread position: 197-554
Cow position: chr17:34157520-34157882 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 203, 164

Conread position: 197-659
Cow position: chr17:15372610-15373060 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 294
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 276, 175

Conread position: 197-660
Cow position: chr17:8203333-8203797 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 312
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 163, 50

Conread position: 197-660
Cow position: chr17:43989900-43990362 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 161

Conread position: 197-688
Cow position: chr17:20403818-20404302 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 318
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 170, 150

Conread position: 197-690
Cow position: chr17:6121183-6121686 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 175

Conread position: 198-687
Cow position: chr17:182972-183468 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 325
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 229, 97

Conread position: 200-723
Cow position: chr17:4783420-4782878 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 10

Conread position: 206-358
Cow position: chr17:1656471-1656323 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 206-370
Cow position: chr17:3707386-3707225 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 206-669
Cow position: chr17:6000092-5999628 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 300
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 157

Conread position: 207-370
Cow position: chr17:9080012-9079850 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 155, 0

Conread position: 207-558
Cow position: chr17:2263547-2263902 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 227
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 203, 154

Conread position: 207-558
Cow position: chr17:13967335-13967693 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 233
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 75, 82

Conread position: 207-606
Cow position: chr17:17257282-17256876 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 270
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 222, 156

Conread position: 207-654
Cow position: chr17:39049623-39050079 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 175

Conread position: 207-658
Cow position: chr17:9751112-9751569 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 297
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 132, 155

Conread position: 207-660
Cow position: chr17:6069951-6070397 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr17:15141947-15141482 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 295
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 224, 96

Conread position: 207-660
Cow position: chr17:15852101-15852561 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 207-660
Cow position: chr17:23038971-23039421 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 306
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 320, 135

Conread position: 207-660
Cow position: chr17:24028596-24028137 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 173

Conread position: 207-660
Cow position: chr17:28027096-28026639 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 207-660
Cow position: chr17:40806215-40806674 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 65

Conread position: 207-687
Cow position: chr17:39848-40337 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 162

Conread position: 207-687
Cow position: chr17:6261267-6261745 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 322
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr17:11784279-11784764 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 9

Conread position: 207-687
Cow position: chr17:14936563-14936076 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 174

Conread position: 207-687
Cow position: chr17:15437192-15437681 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-687
Cow position: chr17:23323040-23322551 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-687
Cow position: chr17:24783570-24784058 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 162

Conread position: 207-687
Cow position: chr17:27793375-27792889 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 162

Conread position: 207-690
Cow position: chr17:29302164-29302665 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 163

Conread position: 208-636
Cow position: chr17:4061513-4061955 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 290
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 153, 105

Conread position: 208-687
Cow position: chr17:20086366-20085884 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 326
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 118, 100

Conread position: 209-687
Cow position: chr17:2554865-2554378 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 160

Conread position: 211-660
Cow position: chr17:136040-136494 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 73

Conread position: 212-455
Cow position: chr17:4675516-4675752 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 129, 0

Conread position: 231-433
Cow position: chr17:19366690-19366881 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 132, 0

Conread position: 232-660
Cow position: chr17:4346146-4345725 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 89

Conread position: 232-687
Cow position: chr17:20099044-20098592 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 295
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 94, 86

Conread position: 235-687
Cow position: chr17:1881702-1882161 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 299
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 54, 49

Conread position: 235-687
Cow position: chr17:19980700-19980242 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 128

Conread position: 238-688
Cow position: chr17:15685847-15686303 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 305
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 88, 78

Conread position: 255-687
Cow position: chr17:34159183-34159625 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 40, 29

Conread position: 276-688
Cow position: chr17:3235438-3235845 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 169, 96

Conread position: 296-688
Cow position: chr17:3326608-3326997 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 248
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 365, 30

Conread position: 381-640
Cow position: chr17:13706322-13706582 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 85

Conread position: 384-660
Cow position: chr17:1656178-1655890 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 44

Conread position: 384-660
Cow position: chr17:2246519-2246221 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 60, 0

Conread position: 385-663
Cow position: chr17:22561465-22561766 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 71, 21

Conread position: 398-688
Cow position: chr17:36001473-36001172 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 25, 12

Conread position: 400-619
Cow position: chr17:21769605-21769380 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 458-660
Cow position: chr17:8497251-8497061 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 162, 71

Conread position: 459-650
Cow position: chr17:19366937-19367131 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 459-660
Cow position: chr17:1458042-1458247 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 0

Conread position: 459-660
Cow position: chr17:2581492-2581697 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 459-660
Cow position: chr17:9230892-9230688 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 107

Conread position: 459-660
Cow position: chr17:14241469-14241671 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 165

Conread position: 459-687
Cow position: chr17:605408-605172 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 19

Conread position: 459-687
Cow position: chr17:8210304-8210538 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 79, 0

Conread position: 459-687
Cow position: chr17:14215385-14215142 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 79, 0

Conread position: 459-687
Cow position: chr17:16153470-16153705 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr17:29826316-29826082 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 30

Conread position: 459-687
Cow position: chr17:34574406-34574640 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr17:45271456-45271222 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 460-660
Cow position: chr17:3607068-3606861 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 460-660
Cow position: chr17:15326945-15327145 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 460-687
Cow position: chr17:19267181-19266947 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 461-603
Cow position: chr17:33284027-33283879 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 461-687
Cow position: chr17:4676001-4676236 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 462-658
Cow position: chr17:2170087-2170285 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 146

Conread position: 462-660
Cow position: chr17:20080230-20080031 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 0

Conread position: 463-688
Cow position: chr17:24310504-24310730 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 20

Conread position: 465-649
Cow position: chr17:2031898-2032087 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 466-660
Cow position: chr17:14896621-14896819 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 466-660
Cow position: chr17:20232408-20232605 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 83

Conread position: 466-660
Cow position: chr17:34323398-34323205 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 130
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 467-660
Cow position: chr17:16120935-16120741 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 64, 31

Conread position: 473-687
Cow position: chr17:36283697-36283917 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 64, 0

Conread position: 475-688
Cow position: chr17:23720952-23721165 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 47

Conread position: 483-687
Cow position: chr17:239953-240162 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 65

Conread position: 513-660
Cow position: chr17:14393364-14393514 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 513-660
Cow position: chr17:18125223-18125074 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 72

Conread position: 519-688
Cow position: chr17:39678101-39678275 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 24, 69

Conread position: 519-688
Cow position: chr17:41811419-41811586 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 535-682
Cow position: chr17:18590163-18590316 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 139

Conread position: 548-687
Cow position: chr17:15710251-15710110 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 130, 0

Conread position: 549-687
Cow position: chr17:2263924-2264064 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 129, 0

Conread position: 560-660
Cow position: chr17:11085924-11085824 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 562-687
Cow position: chr17:20415039-20415166 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Show alignments to all cow chromosomes.