Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 187-457 |
| Cow position: | chr18:55055748-55056016 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 188-660 |
| Cow position: | chr18:37663906-37664363 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 104 |
| Conread position: | 197-660 |
| Cow position: | chr18:14131997-14132466 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 197-660 |
| Cow position: | chr18:15856807-15857259 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 221, 65 |
| Conread position: | 197-660 |
| Cow position: | chr18:35373160-35372699 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 197-687 |
| Cow position: | chr18:25921997-25922491 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 197-688 |
| Cow position: | chr18:37490434-37490928 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 198-355 |
| Cow position: | chr18:42516233-42516394 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 205-660 |
| Cow position: | chr18:51274466-51274009 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 191 |
| Conread position: | 206-660 |
| Cow position: | chr18:16392498-16392048 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 166 |
| Conread position: | 207-530 |
| Cow position: | chr18:48469564-48469239 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 217, 153 |
| Conread position: | 207-536 |
| Cow position: | chr18:51343299-51343631 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 201, 154 |
| Conread position: | 207-660 |
| Cow position: | chr18:4947571-4948017 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 211, 32 |
| Conread position: | 207-660 |
| Cow position: | chr18:5534626-5535082 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 207-660 |
| Cow position: | chr18:11273241-11272782 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 253 |
| Conread position: | 207-660 |
| Cow position: | chr18:14417583-14418045 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr18:16175004-16174545 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr18:27988802-27989262 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-687 |
| Cow position: | chr18:23799265-23799749 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 63 |
| Conread position: | 207-687 |
| Cow position: | chr18:24617749-24618238 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-687 |
| Cow position: | chr18:32166307-32165824 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 156 |
| Conread position: | 207-687 |
| Cow position: | chr18:36510233-36510722 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 207-687 |
| Cow position: | chr18:37507578-37508067 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 78 |
| Conread position: | 207-687 |
| Cow position: | chr18:40482613-40483101 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-690 |
| Cow position: | chr18:19353983-19354475 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 162 |
| Conread position: | 208-660 |
| Cow position: | chr18:46867294-46866839 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 209-657 |
| Cow position: | chr18:19485761-19486229 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 199, 151 |
| Conread position: | 211-687 |
| Cow position: | chr18:25352880-25353368 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 221-373 |
| Cow position: | chr18:12237812-12237961 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 222-660 |
| Cow position: | chr18:51482485-51482930 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 232-660 |
| Cow position: | chr18:41839175-41838714 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 235-660 |
| Cow position: | chr18:52654460-52654886 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 175, 143 |
| Conread position: | 236-660 |
| Cow position: | chr18:16147343-16146938 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 107 |
| Conread position: | 243-657 |
| Cow position: | chr18:56484994-56484617 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 302, 15 |
| Conread position: | 248-687 |
| Cow position: | chr18:23660844-23660393 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 115 |
| Conread position: | 250-660 |
| Cow position: | chr18:23442155-23441746 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 110, 177 |
| Conread position: | 261-680 |
| Cow position: | chr18:46875698-46875276 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 262-690 |
| Cow position: | chr18:47743160-47743599 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 350-652 |
| Cow position: | chr18:36783132-36783441 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 353-660 |
| Cow position: | chr18:159500-159194 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 185, 5 |
| Conread position: | 363-652 |
| Cow position: | chr18:44183485-44183184 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 383-660 |
| Cow position: | chr18:5078322-5078026 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 452-661 |
| Cow position: | chr18:8644864-8645073 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 459-660 |
| Cow position: | chr18:999332-999528 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 459-660 |
| Cow position: | chr18:18495159-18494959 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 459-660 |
| Cow position: | chr18:22183653-22183449 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 89 |
| Conread position: | 459-660 |
| Cow position: | chr18:27836214-27836009 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr18:29864740-29864535 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr18:33270770-33270971 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 33, 160 |
| Conread position: | 459-660 |
| Cow position: | chr18:35055641-35055848 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr18:42266876-42267084 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr18:51695849-51696055 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-682 |
| Cow position: | chr18:1046147-1046368 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 146, 180 |
| Conread position: | 459-687 |
| Cow position: | chr18:9722495-9722729 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr18:16464990-16464756 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-687 |
| Cow position: | chr18:23703216-23702982 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 459-687 |
| Cow position: | chr18:37701621-37701387 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr18:51460974-51460739 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-688 |
| Cow position: | chr18:6883296-6883061 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 84, 192 |
| Conread position: | 459-688 |
| Cow position: | chr18:35290523-35290757 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 459-693 |
| Cow position: | chr18:37584036-37583796 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 460-660 |
| Cow position: | chr18:54025680-54025881 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 463-619 |
| Cow position: | chr18:54106980-54107140 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 463-631 |
| Cow position: | chr18:16136806-16136634 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 89 |
| Conread position: | 465-660 |
| Cow position: | chr18:40315555-40315356 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 465-660 |
| Cow position: | chr18:40344519-40344319 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 73, 139 |
| Conread position: | 467-687 |
| Cow position: | chr18:44149518-44149298 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 70, 163 |
| Conread position: | 476-631 |
| Cow position: | chr18:33761914-33762068 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 488-660 |
| Cow position: | chr18:28971305-28971129 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 495-660 |
| Cow position: | chr18:48450727-48450891 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 500-660 |
| Cow position: | chr18:54272359-54272522 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 506-687 |
| Cow position: | chr18:28766714-28766901 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 510-688 |
| Cow position: | chr18:37156824-37156640 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 513-660 |
| Cow position: | chr18:32438183-32438032 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 516-654 |
| Cow position: | chr18:42780561-42780419 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 535-658 |
| Cow position: | chr18:19456798-19456922 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 535-660 |
| Cow position: | chr18:8249327-8249452 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-687 |
| Cow position: | chr18:40158259-40158413 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 535-687 |
| Cow position: | chr18:51344050-51344204 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 548-658 |
| Cow position: | chr18:24985461-24985350 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 548-687 |
| Cow position: | chr18:604823-604682 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 0 |
Show alignments to all cow chromosomes.