Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 197-635 |
| Cow position: | chr19:1660274-1660724 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 275 |
| Conread position: | 197-652 |
| Cow position: | chr19:33596157-33595718 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 303 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 347, 119 |
| Conread position: | 197-657 |
| Cow position: | chr19:16319018-16318536 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 314 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 232, 166 |
| Conread position: | 197-660 |
| Cow position: | chr19:166517-166043 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 221, 124 |
| Conread position: | 197-660 |
| Cow position: | chr19:173872-174344 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 197-687 |
| Cow position: | chr19:5730452-5730950 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 87 |
| Conread position: | 202-688 |
| Cow position: | chr19:48860147-48859655 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 161 |
| Conread position: | 205-660 |
| Cow position: | chr19:23400622-23400178 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 116 |
| Conread position: | 207-370 |
| Cow position: | chr19:30559808-30559971 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-455 |
| Cow position: | chr19:16128777-16129017 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 207-659 |
| Cow position: | chr19:892015-891559 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-659 |
| Cow position: | chr19:39666927-39666475 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 186 |
| Conread position: | 207-660 |
| Cow position: | chr19:1583873-1584338 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-660 |
| Cow position: | chr19:2272495-2272039 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 171 |
| Conread position: | 207-660 |
| Cow position: | chr19:9706553-9706103 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 61 |
| Conread position: | 207-660 |
| Cow position: | chr19:28580054-28579594 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr19:33875032-33875492 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 171 |
| Conread position: | 207-660 |
| Cow position: | chr19:39183924-39183463 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr19:40850843-40850405 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 203, 15 |
| Conread position: | 207-660 |
| Cow position: | chr19:40886119-40885660 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 206, 7 |
| Conread position: | 207-687 |
| Cow position: | chr19:774225-774714 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 154, 257 |
| Conread position: | 207-687 |
| Cow position: | chr19:5899888-5899400 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 156 |
| Conread position: | 207-687 |
| Cow position: | chr19:20106347-20106831 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 156 |
| Conread position: | 207-687 |
| Cow position: | chr19:28595157-28595645 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 168 |
| Conread position: | 207-687 |
| Cow position: | chr19:39392131-39392617 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 207-687 |
| Cow position: | chr19:52150061-52149572 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 156 |
| Conread position: | 209-586 |
| Cow position: | chr19:40471078-40470695 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 103, 156 |
| Conread position: | 210-660 |
| Cow position: | chr19:206132-206580 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 299 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 255, 159 |
| Conread position: | 211-687 |
| Cow position: | chr19:7343692-7344176 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 158 |
| Conread position: | 222-460 |
| Cow position: | chr19:11900348-11900582 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 223-359 |
| Cow position: | chr19:14159526-14159391 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 235-647 |
| Cow position: | chr19:547940-547517 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 249 |
| Conread position: | 235-658 |
| Cow position: | chr19:2586857-2587301 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 235-660 |
| Cow position: | chr19:43146308-43146751 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 175, 128 |
| Conread position: | 259-660 |
| Cow position: | chr19:1489396-1488989 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 279-660 |
| Cow position: | chr19:33904760-33905137 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 385-660 |
| Cow position: | chr19:4302061-4302342 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 456-660 |
| Cow position: | chr19:343122-343328 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 459-657 |
| Cow position: | chr19:39689641-39689849 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 459-660 |
| Cow position: | chr19:437467-437260 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr19:4387477-4387677 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 459-660 |
| Cow position: | chr19:33943443-33943648 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-660 |
| Cow position: | chr19:36417896-36418103 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 154 |
| Conread position: | 459-687 |
| Cow position: | chr19:40224-40465 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-687 |
| Cow position: | chr19:15445988-15445754 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-687 |
| Cow position: | chr19:21338971-21338738 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-687 |
| Cow position: | chr19:22511899-22511668 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 79, 190 |
| Conread position: | 459-688 |
| Cow position: | chr19:7071290-7071519 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 219, 95 |
| Conread position: | 461-659 |
| Cow position: | chr19:39097289-39097490 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 461-660 |
| Cow position: | chr19:15947895-15948094 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 462-660 |
| Cow position: | chr19:30560064-30560260 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 104 |
| Conread position: | 464-656 |
| Cow position: | chr19:257190-257386 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 464-660 |
| Cow position: | chr19:27035773-27035570 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 465-660 |
| Cow position: | chr19:5248907-5248709 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 466-657 |
| Cow position: | chr19:44032350-44032541 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 467-660 |
| Cow position: | chr19:5782631-5782437 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 107 |
| Conread position: | 467-660 |
| Cow position: | chr19:28796328-28796131 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 467-660 |
| Cow position: | chr19:40835386-40835188 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 468-687 |
| Cow position: | chr19:12775002-12775227 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 484-677 |
| Cow position: | chr19:3175266-3175453 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 485-677 |
| Cow position: | chr19:16129268-16129465 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 492-657 |
| Cow position: | chr19:38794805-38794643 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 143, 30 |
| Conread position: | 500-687 |
| Cow position: | chr19:51068825-51068632 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 515-660 |
| Cow position: | chr19:7490027-7490177 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 524-690 |
| Cow position: | chr19:265601-265768 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 154, 73 |
| Conread position: | 535-661 |
| Cow position: | chr19:42582328-42582202 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.