Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 197-359 |
| Cow position: | chr20:13499679-13499841 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-651 |
| Cow position: | chr20:13764467-13764929 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 197-660 |
| Cow position: | chr20:21916209-21916676 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 205-404 |
| Cow position: | chr20:32349784-32349982 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 205-448 |
| Cow position: | chr20:7572986-7572747 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 207-457 |
| Cow position: | chr20:8972595-8972357 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 207-460 |
| Cow position: | chr20:12436838-12436583 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-616 |
| Cow position: | chr20:24615323-24614909 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 151, 103 |
| Conread position: | 207-627 |
| Cow position: | chr20:9547229-9547655 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 58 |
| Conread position: | 207-643 |
| Cow position: | chr20:13678261-13677823 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 207-658 |
| Cow position: | chr20:5536526-5536972 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-658 |
| Cow position: | chr20:28563998-28563539 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-660 |
| Cow position: | chr20:824349-824820 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 207-660 |
| Cow position: | chr20:15096312-15095850 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 207-660 |
| Cow position: | chr20:19439498-19439956 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 203, 162 |
| Conread position: | 207-660 |
| Cow position: | chr20:29950107-29950565 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-660 |
| Cow position: | chr20:30429854-30430311 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 156 |
| Conread position: | 207-687 |
| Cow position: | chr20:20441369-20440880 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 156 |
| Conread position: | 207-687 |
| Cow position: | chr20:23800465-23800956 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-687 |
| Cow position: | chr20:25899270-25899759 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 162 |
| Conread position: | 207-687 |
| Cow position: | chr20:26054108-26053620 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 156 |
| Conread position: | 207-687 |
| Cow position: | chr20:28162407-28162887 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-688 |
| Cow position: | chr20:871441-870931 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 227 |
| Conread position: | 208-660 |
| Cow position: | chr20:30687170-30687619 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 210-355 |
| Cow position: | chr20:19341412-19341556 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 211-660 |
| Cow position: | chr20:925825-925379 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 238, 69 |
| Conread position: | 211-660 |
| Cow position: | chr20:17660159-17659701 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 211-687 |
| Cow position: | chr20:15293567-15294052 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 212-658 |
| Cow position: | chr20:23899033-23899453 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 160, 65 |
| Conread position: | 221-657 |
| Cow position: | chr20:8366129-8365689 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 121, 98 |
| Conread position: | 221-692 |
| Cow position: | chr20:18323370-18322884 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 133, 65 |
| Conread position: | 222-660 |
| Cow position: | chr20:23468071-23467626 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 223-687 |
| Cow position: | chr20:16178149-16177678 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 232-660 |
| Cow position: | chr20:15067063-15067482 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 238-665 |
| Cow position: | chr20:18968094-18968527 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 250-686 |
| Cow position: | chr20:13793652-13794088 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 273-688 |
| Cow position: | chr20:22697368-22696952 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 293-688 |
| Cow position: | chr20:38706962-38707378 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 387-661 |
| Cow position: | chr20:8215504-8215222 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 94 |
| Conread position: | 417-688 |
| Cow position: | chr20:16957920-16957644 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 450-654 |
| Cow position: | chr20:20147927-20147719 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 457-647 |
| Cow position: | chr20:13769675-13769868 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 459-636 |
| Cow position: | chr20:35145034-35144853 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 124 |
| Conread position: | 459-660 |
| Cow position: | chr20:8351502-8351289 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 459-660 |
| Cow position: | chr20:8972334-8972129 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr20:12436563-12436356 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr20:12692896-12693101 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 128 |
| Conread position: | 459-660 |
| Cow position: | chr20:19341662-19341857 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 105 |
| Conread position: | 459-660 |
| Cow position: | chr20:27338984-27339185 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 459-660 |
| Cow position: | chr20:32350083-32350287 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 459-660 |
| Cow position: | chr20:35126493-35126705 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr20:39881106-39881312 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 459-669 |
| Cow position: | chr20:21718396-21718612 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 459-678 |
| Cow position: | chr20:14327764-14327987 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-687 |
| Cow position: | chr20:30577723-30577958 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-690 |
| Cow position: | chr20:33598277-33598514 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 460-660 |
| Cow position: | chr20:15323823-15324026 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 460-660 |
| Cow position: | chr20:31497563-31497358 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 461-660 |
| Cow position: | chr20:21396073-21396276 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 461-688 |
| Cow position: | chr20:37582003-37582236 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 12, 128 |
| Conread position: | 462-603 |
| Cow position: | chr20:13953024-13953168 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 462-688 |
| Cow position: | chr20:7513188-7513416 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 466-687 |
| Cow position: | chr20:28720281-28720512 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 467-660 |
| Cow position: | chr20:10867944-10867748 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 468-660 |
| Cow position: | chr20:12046359-12046554 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 475-654 |
| Cow position: | chr20:7570384-7570201 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 475-660 |
| Cow position: | chr20:6900263-6900074 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 475-687 |
| Cow position: | chr20:6906502-6906284 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 476-687 |
| Cow position: | chr20:35018785-35019000 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 484-660 |
| Cow position: | chr20:41363783-41363603 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 498-687 |
| Cow position: | chr20:28261118-28260921 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 506-688 |
| Cow position: | chr20:5075905-5076094 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 535-687 |
| Cow position: | chr20:30386312-30386158 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 547-687 |
| Cow position: | chr20:13655353-13655211 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
Show alignments to all cow chromosomes.