Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 181-684
Cow position: chr21:14645343-14644840 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 327
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 28, 77

Conread position: 196-460
Cow position: chr21:29003850-29003591 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 58, 172

Conread position: 196-657
Cow position: chr21:39426755-39427215 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 71

Conread position: 197-367
Cow position: chr21:7591342-7591513 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 164, 0

Conread position: 197-641
Cow position: chr21:4565145-4565589 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 79

Conread position: 197-656
Cow position: chr21:468584-469049 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 304
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 70

Conread position: 197-660
Cow position: chr21:2539395-2538918 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 309
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 11, 182

Conread position: 197-686
Cow position: chr21:34655512-34656006 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 184

Conread position: 197-687
Cow position: chr21:1286531-1286032 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 337
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 265, 163

Conread position: 197-687
Cow position: chr21:37372910-37373409 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 100

Conread position: 199-352
Cow position: chr21:28985781-28985934 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 205-660
Cow position: chr21:21701603-21702059 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 310
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 12

Conread position: 206-660
Cow position: chr21:13298286-13298732 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 115

Conread position: 206-687
Cow position: chr21:3780466-3780955 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 324
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 89, 78

Conread position: 207-387
Cow position: chr21:27150174-27150353 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 154, 0

Conread position: 207-535
Cow position: chr21:6414330-6413999 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 213
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 154, 175

Conread position: 207-594
Cow position: chr21:11157127-11156734 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 270
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 119, 90

Conread position: 207-645
Cow position: chr21:25125304-25125738 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 283
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 259, 60

Conread position: 207-660
Cow position: chr21:997153-996687 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 299
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 73, 201

Conread position: 207-660
Cow position: chr21:5018834-5019296 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr21:26635463-26635003 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-660
Cow position: chr21:30563364-30563817 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 305
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 211, 111

Conread position: 207-660
Cow position: chr21:30597776-30597314 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 308
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 89, 77

Conread position: 207-660
Cow position: chr21:31514622-31514163 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr21:47647025-47647487 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 163

Conread position: 207-687
Cow position: chr21:2512544-2513032 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 7

Conread position: 207-687
Cow position: chr21:10568393-10568874 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 77

Conread position: 207-687
Cow position: chr21:11507308-11507790 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 161

Conread position: 207-687
Cow position: chr21:19612454-19612939 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 156

Conread position: 207-687
Cow position: chr21:26836884-26837370 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 171

Conread position: 207-687
Cow position: chr21:33710843-33711316 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 154

Conread position: 207-687
Cow position: chr21:47942643-47943129 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 80

Conread position: 207-723
Cow position: chr21:28257116-28257640 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 151

Conread position: 208-359
Cow position: chr21:38802132-38802283 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 210-672
Cow position: chr21:21025154-21025637 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 333
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 249, 71

Conread position: 210-687
Cow position: chr21:2880128-2879645 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 314
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 74

Conread position: 221-660
Cow position: chr21:38023838-38024256 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 27

Conread position: 222-660
Cow position: chr21:17224988-17224538 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 311
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 230, 108

Conread position: 227-517
Cow position: chr21:23804136-23803846 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 168, 132

Conread position: 227-660
Cow position: chr21:36979187-36978751 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 232

Conread position: 230-660
Cow position: chr21:35143975-35143541 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 307
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 7, 55

Conread position: 232-660
Cow position: chr21:4588295-4587884 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 283
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 220, 60

Conread position: 232-660
Cow position: chr21:31250712-31251145 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 191, 98

Conread position: 232-660
Cow position: chr21:34000365-33999921 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 298
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 129, 56

Conread position: 232-687
Cow position: chr21:42915526-42915987 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 301
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 180, 131

Conread position: 247-660
Cow position: chr21:2417940-2418356 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 280
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 172, 11

Conread position: 365-687
Cow position: chr21:37124509-37124174 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 23, 309

Conread position: 372-688
Cow position: chr21:36980493-36980827 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 282

Conread position: 375-660
Cow position: chr21:8835844-8836141 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 196
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 380-658
Cow position: chr21:28987005-28987294 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 31, 68

Conread position: 384-660
Cow position: chr21:27285307-27285601 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 385-619
Cow position: chr21:9865211-9864964 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 72, 184

Conread position: 385-659
Cow position: chr21:37149834-37150134 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 71, 135

Conread position: 386-659
Cow position: chr21:6626387-6626655 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 112

Conread position: 387-660
Cow position: chr21:361528-361818 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 406-662
Cow position: chr21:4185616-4185873 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 57, 70

Conread position: 454-660
Cow position: chr21:26401809-26401599 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 84, 0

Conread position: 458-660
Cow position: chr21:4865910-4865710 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 25

Conread position: 459-600
Cow position: chr21:40683359-40683504 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 459-658
Cow position: chr21:30977-31172 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 459-659
Cow position: chr21:21942618-21942414 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 459-660
Cow position: chr21:2672329-2672127 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 84, 196

Conread position: 459-660
Cow position: chr21:4096627-4096832 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 77, 0

Conread position: 459-660
Cow position: chr21:7591605-7591813 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 459-660
Cow position: chr21:10852172-10852373 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 177

Conread position: 459-660
Cow position: chr21:27069015-27068810 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 84, 0

Conread position: 459-660
Cow position: chr21:28614262-28614472 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 81, 24

Conread position: 459-660
Cow position: chr21:33318447-33318237 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr21:41797641-41797846 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr21:45783382-45783587 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 77, 148

Conread position: 459-677
Cow position: chr21:32897901-32897684 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 176, 46

Conread position: 459-687
Cow position: chr21:147869-148103 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 79, 0

Conread position: 459-687
Cow position: chr21:6967514-6967280 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 79, 0

Conread position: 459-687
Cow position: chr21:43564159-43563926 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 0

Conread position: 459-688
Cow position: chr21:29003571-29003340 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 179, 80

Conread position: 460-655
Cow position: chr21:15249478-15249281 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 461-687
Cow position: chr21:44764003-44763771 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 462-654
Cow position: chr21:35774866-35775053 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 11

Conread position: 462-660
Cow position: chr21:40269719-40269519 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 76, 105

Conread position: 462-676
Cow position: chr21:4036201-4036419 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 76, 0

Conread position: 466-645
Cow position: chr21:11469701-11469883 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 42

Conread position: 466-651
Cow position: chr21:26648616-26648427 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 466-660
Cow position: chr21:4716917-4717108 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 7

Conread position: 466-660
Cow position: chr21:27031217-27031409 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 476-660
Cow position: chr21:3804888-3805074 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 72

Conread position: 476-660
Cow position: chr21:11290641-11290839 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 476-687
Cow position: chr21:27149593-27149376 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 480-687
Cow position: chr21:29949761-29949975 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 7, 0

Conread position: 484-676
Cow position: chr21:7154309-7154503 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 514-660
Cow position: chr21:28853854-28853704 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 534-660
Cow position: chr21:1194541-1194667 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 535-657
Cow position: chr21:23652962-23653085 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 547-660
Cow position: chr21:4139070-4138957 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 548-656
Cow position: chr21:21917283-21917391 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.