Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 197-455 |
| Cow position: | chr23:26838326-26838578 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 197-659 |
| Cow position: | chr23:18126743-18126264 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 146, 153 |
| Conread position: | 197-685 |
| Cow position: | chr23:30237793-30238273 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 138 |
| Conread position: | 197-687 |
| Cow position: | chr23:608224-608720 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 109 |
| Conread position: | 205-658 |
| Cow position: | chr23:3707920-3708381 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 222, 158 |
| Conread position: | 205-687 |
| Cow position: | chr23:15876052-15875563 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 318 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 203, 22 |
| Conread position: | 207-367 |
| Cow position: | chr23:8287459-8287620 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-558 |
| Cow position: | chr23:41141708-41141349 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 221, 154 |
| Conread position: | 207-648 |
| Cow position: | chr23:32351243-32350795 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 156 |
| Conread position: | 207-656 |
| Cow position: | chr23:4818541-4818993 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-658 |
| Cow position: | chr23:14961433-14960978 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 207-660 |
| Cow position: | chr23:2759417-2759879 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr23:3879567-3879108 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-660 |
| Cow position: | chr23:4435171-4435632 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 304 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 59, 193 |
| Conread position: | 207-660 |
| Cow position: | chr23:4639073-4638618 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 207-660 |
| Cow position: | chr23:4890205-4890665 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 88, 47 |
| Conread position: | 207-660 |
| Cow position: | chr23:15527096-15527560 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 207-660 |
| Cow position: | chr23:20154708-20154243 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr23:22369581-22369131 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 207-660 |
| Cow position: | chr23:31164322-31164780 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-687 |
| Cow position: | chr23:5873053-5872562 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 207-687 |
| Cow position: | chr23:7314429-7314919 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 162 |
| Conread position: | 207-687 |
| Cow position: | chr23:11714347-11713858 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 156 |
| Conread position: | 207-687 |
| Cow position: | chr23:19491070-19491558 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-687 |
| Cow position: | chr23:28218944-28219442 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 262 |
| Conread position: | 207-687 |
| Cow position: | chr23:28304434-28304923 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-688 |
| Cow position: | chr23:23283044-23283535 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 197, 156 |
| Conread position: | 210-660 |
| Cow position: | chr23:15218366-15217922 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 221-660 |
| Cow position: | chr23:1400672-1400234 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 189, 55 |
| Conread position: | 222-658 |
| Cow position: | chr23:13512621-13513052 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 171, 13 |
| Conread position: | 222-662 |
| Cow position: | chr23:964961-964521 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 227-563 |
| Cow position: | chr23:26158902-26158569 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 221, 40 |
| Conread position: | 227-660 |
| Cow position: | chr23:21821780-21821347 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 171, 189 |
| Conread position: | 227-688 |
| Cow position: | chr23:2342617-2343102 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 57 |
| Conread position: | 228-536 |
| Cow position: | chr23:11074938-11074636 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 135 |
| Conread position: | 231-658 |
| Cow position: | chr23:617946-617504 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 168, 70 |
| Conread position: | 239-658 |
| Cow position: | chr23:2793718-2793292 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 344-655 |
| Cow position: | chr23:2319533-2319204 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 382-665 |
| Cow position: | chr23:2577305-2577608 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 384-660 |
| Cow position: | chr23:25677278-25676982 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 65, 215 |
| Conread position: | 384-688 |
| Cow position: | chr23:11931838-11932154 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 386-660 |
| Cow position: | chr23:29443391-29443110 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 459-598 |
| Cow position: | chr23:22168442-22168585 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 459-636 |
| Cow position: | chr23:37130019-37129834 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 459-657 |
| Cow position: | chr23:3417983-3418185 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-659 |
| Cow position: | chr23:7044433-7044233 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 459-660 |
| Cow position: | chr23:1340028-1339823 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 459-660 |
| Cow position: | chr23:1957934-1958142 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr23:2025307-2025102 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr23:7357011-7357216 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 459-660 |
| Cow position: | chr23:15178837-15179042 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 459-660 |
| Cow position: | chr23:16497479-16497276 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 459-660 |
| Cow position: | chr23:17844657-17844857 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 459-660 |
| Cow position: | chr23:19279244-19279040 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 459-660 |
| Cow position: | chr23:29450556-29450356 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 459-687 |
| Cow position: | chr23:942735-942970 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 459-687 |
| Cow position: | chr23:10874829-10874591 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 459-687 |
| Cow position: | chr23:22145532-22145298 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-687 |
| Cow position: | chr23:36029610-36029381 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 459-687 |
| Cow position: | chr23:37200746-37200512 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 460-608 |
| Cow position: | chr23:6221062-6221210 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 460-655 |
| Cow position: | chr23:1022184-1021985 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 77, 136 |
| Conread position: | 460-661 |
| Cow position: | chr23:1050759-1050552 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 461-658 |
| Cow position: | chr23:33297911-33297714 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 461-660 |
| Cow position: | chr23:948050-947848 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 461-687 |
| Cow position: | chr23:38579447-38579675 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 462-660 |
| Cow position: | chr23:38582402-38582602 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 463-687 |
| Cow position: | chr23:16055552-16055783 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 485-689 |
| Cow position: | chr23:26838729-26838943 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 511-658 |
| Cow position: | chr23:30212965-30212814 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 514-686 |
| Cow position: | chr23:11780617-11780795 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 533-658 |
| Cow position: | chr23:22942120-22941994 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 535-649 |
| Cow position: | chr23:19006085-19005973 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 536-660 |
| Cow position: | chr23:10975721-10975597 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-658 |
| Cow position: | chr23:4515117-4515227 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-676 |
| Cow position: | chr23:34257131-34257004 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 557-687 |
| Cow position: | chr23:41142219-41142351 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
Show alignments to all cow chromosomes.