Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 3-206
Cow position: chr24:17958224-17958029 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 181-686
Cow position: chr24:6668174-6667674 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 327
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 207, 23

Conread position: 184-358
Cow position: chr24:6060995-6061168 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 138

Conread position: 189-687
Cow position: chr24:9073760-9073226 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 352
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 133, 13

Conread position: 197-445
Cow position: chr24:38639121-38639357 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 197-456
Cow position: chr24:40469770-40469531 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 67

Conread position: 197-461
Cow position: chr24:17957948-17957687 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 166

Conread position: 197-652
Cow position: chr24:32847613-32848075 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 301
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 175, 46

Conread position: 197-660
Cow position: chr24:6353736-6354202 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 308
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 98, 20

Conread position: 197-660
Cow position: chr24:13189771-13190234 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 313
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 213, 55

Conread position: 205-361
Cow position: chr24:36299013-36299169 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 205-373
Cow position: chr24:35868978-35868811 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 154, 0

Conread position: 205-660
Cow position: chr24:37215404-37214944 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 290
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 150, 14

Conread position: 206-619
Cow position: chr24:39492022-39491614 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 265
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 150, 23

Conread position: 206-654
Cow position: chr24:14870726-14870263 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 27

Conread position: 207-370
Cow position: chr24:310476-310638 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 154, 0

Conread position: 207-370
Cow position: chr24:44019117-44019280 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 207-635
Cow position: chr24:23504251-23503817 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-660
Cow position: chr24:147003-146541 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 174

Conread position: 207-660
Cow position: chr24:6963142-6962682 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-660
Cow position: chr24:9090449-9089993 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 300
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 203, 99

Conread position: 207-660
Cow position: chr24:17322300-17322744 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 126

Conread position: 207-660
Cow position: chr24:29188895-29189357 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr24:33934996-33935456 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 207-671
Cow position: chr24:7089393-7088931 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 97

Conread position: 207-672
Cow position: chr24:19703096-19703579 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 40

Conread position: 207-687
Cow position: chr24:7063151-7063635 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 20

Conread position: 208-457
Cow position: chr24:12149685-12149449 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 126, 0

Conread position: 208-687
Cow position: chr24:6337992-6338479 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 27

Conread position: 208-687
Cow position: chr24:13044018-13043531 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 161

Conread position: 209-660
Cow position: chr24:40101307-40100855 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 305
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 40, 68

Conread position: 211-687
Cow position: chr24:19835019-19835498 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 59

Conread position: 222-660
Cow position: chr24:23094401-23093963 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 62

Conread position: 223-595
Cow position: chr24:35840270-35839914 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 102, 144

Conread position: 223-660
Cow position: chr24:16560694-16560242 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 298
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 167

Conread position: 228-687
Cow position: chr24:36557932-36557472 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 308
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 182, 48

Conread position: 232-687
Cow position: chr24:13233882-13234345 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 131

Conread position: 235-665
Cow position: chr24:36480322-36479883 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 256
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 99, 138

Conread position: 238-660
Cow position: chr24:39678950-39679390 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 122, 171

Conread position: 244-690
Cow position: chr24:6327721-6327269 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 293, 0

Conread position: 247-660
Cow position: chr24:13512144-13511726 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 123, 40

Conread position: 290-660
Cow position: chr24:11151433-11151060 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 261
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 137, 69

Conread position: 341-651
Cow position: chr24:24864368-24864673 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 372-652
Cow position: chr24:33028960-33029245 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 98, 40

Conread position: 420-620
Cow position: chr24:38475085-38475282 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 51

Conread position: 454-660
Cow position: chr24:17927701-17927490 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 102, 44

Conread position: 459-620
Cow position: chr24:17957668-17957504 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 160

Conread position: 459-656
Cow position: chr24:6677908-6678103 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 75, 25

Conread position: 459-658
Cow position: chr24:6658404-6658188 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 459-659
Cow position: chr24:22972928-22973132 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 24

Conread position: 459-660
Cow position: chr24:4413692-4413491 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 23

Conread position: 459-660
Cow position: chr24:8150457-8150254 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 77, 12

Conread position: 459-660
Cow position: chr24:11563398-11563194 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 40, 35

Conread position: 459-660
Cow position: chr24:12149426-12149221 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 14, 25

Conread position: 459-660
Cow position: chr24:16082637-16082431 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr24:16098379-16098585 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 459-660
Cow position: chr24:19468745-19468541 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 84, 0

Conread position: 459-660
Cow position: chr24:29085374-29085570 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 37, 0

Conread position: 459-660
Cow position: chr24:36299274-36299474 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 47

Conread position: 459-660
Cow position: chr24:36723913-36724110 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 14

Conread position: 459-660
Cow position: chr24:40550486-40550691 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr24:6022218-6021984 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr24:12088063-12088295 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 205

Conread position: 459-687
Cow position: chr24:23096900-23096672 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 219, 19

Conread position: 460-648
Cow position: chr24:22321599-22321784 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 460-660
Cow position: chr24:14377817-14377618 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 89

Conread position: 460-660
Cow position: chr24:20123511-20123311 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 26

Conread position: 460-660
Cow position: chr24:34580431-34580234 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 460-660
Cow position: chr24:38585271-38585067 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 78, 0

Conread position: 460-687
Cow position: chr24:209145-208910 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 77, 139

Conread position: 461-660
Cow position: chr24:12333873-12333660 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 461-660
Cow position: chr24:19184030-19184233 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 461-687
Cow position: chr24:5991298-5991067 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 76, 64

Conread position: 462-660
Cow position: chr24:6323401-6323198 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 37, 0

Conread position: 462-660
Cow position: chr24:6411345-6411542 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 81, 9

Conread position: 462-677
Cow position: chr24:14305638-14305858 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 51

Conread position: 466-658
Cow position: chr24:42583892-42583699 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 155

Conread position: 466-660
Cow position: chr24:17300039-17299844 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 81, 59

Conread position: 466-660
Cow position: chr24:18268631-18268422 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 466-660
Cow position: chr24:36711982-36712178 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 7

Conread position: 469-650
Cow position: chr24:14174869-14174688 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 14

Conread position: 480-687
Cow position: chr24:16182478-16182692 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 7, 0

Conread position: 483-659
Cow position: chr24:36038327-36038149 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 60, 159

Conread position: 484-660
Cow position: chr24:36131807-36131980 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 488-687
Cow position: chr24:17455245-17455040 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 492-660
Cow position: chr24:30816975-30817143 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 506-660
Cow position: chr24:38639459-38639612 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 511-660
Cow position: chr24:11938052-11937901 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 530-660
Cow position: chr24:5743591-5743723 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 535-687
Cow position: chr24:12699087-12698934 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 143, 62

Conread position: 537-676
Cow position: chr24:1450933-1451069 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 550-688
Cow position: chr24:13322805-13322942 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 553-687
Cow position: chr24:6439706-6439842 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 0

Show alignments to all cow chromosomes.