Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 181-660 |
| Cow position: | chr25:34238681-34238217 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 187-685 |
| Cow position: | chr25:33260774-33261253 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 197-687 |
| Cow position: | chr25:17588006-17587508 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 130 |
| Conread position: | 206-660 |
| Cow position: | chr25:35627878-35627430 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 207-370 |
| Cow position: | chr25:13062139-13061976 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-370 |
| Cow position: | chr25:20346412-20346249 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-648 |
| Cow position: | chr25:12941100-12940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 33 |
| Conread position: | 207-660 |
| Cow position: | chr25:2368570-2369025 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 153 |
| Conread position: | 207-660 |
| Cow position: | chr25:13693097-13692637 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 156 |
| Conread position: | 207-660 |
| Cow position: | chr25:18273213-18272787 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 336, 87 |
| Conread position: | 207-660 |
| Cow position: | chr25:18888173-18887713 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 207-660 |
| Cow position: | chr25:20631195-20631654 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 207-660 |
| Cow position: | chr25:25508278-25508733 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-676 |
| Cow position: | chr25:19922111-19922593 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 149, 255 |
| Conread position: | 207-677 |
| Cow position: | chr25:11041920-11042392 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 28 |
| Conread position: | 207-687 |
| Cow position: | chr25:18178256-18178746 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 125 |
| Conread position: | 207-687 |
| Cow position: | chr25:27021025-27020538 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 114 |
| Conread position: | 207-688 |
| Cow position: | chr25:11931224-11930738 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 160, 202 |
| Conread position: | 208-687 |
| Cow position: | chr25:19339027-19338540 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 50 |
| Conread position: | 210-660 |
| Cow position: | chr25:34345430-34344975 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 211-640 |
| Cow position: | chr25:24215922-24215491 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 211-657 |
| Cow position: | chr25:16924827-16924374 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 115 |
| Conread position: | 212-627 |
| Cow position: | chr25:18305716-18306144 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 149, 17 |
| Conread position: | 221-659 |
| Cow position: | chr25:18251351-18250924 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 139, 117 |
| Conread position: | 239-660 |
| Cow position: | chr25:28861210-28861638 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 262-659 |
| Cow position: | chr25:17656029-17656426 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 263-660 |
| Cow position: | chr25:27522998-27522600 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 277-657 |
| Cow position: | chr25:18192011-18191628 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 83, 180 |
| Conread position: | 365-660 |
| Cow position: | chr25:23847521-23847225 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 365-660 |
| Cow position: | chr25:34495690-34495381 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 383-659 |
| Cow position: | chr25:21965719-21966015 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 398-654 |
| Cow position: | chr25:13793721-13793463 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 409-644 |
| Cow position: | chr25:14000514-14000751 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 420-687 |
| Cow position: | chr25:26354128-26354393 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 459-640 |
| Cow position: | chr25:26455312-26455496 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 459-652 |
| Cow position: | chr25:9393773-9393965 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 459-656 |
| Cow position: | chr25:32579073-32578873 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 459-658 |
| Cow position: | chr25:17558340-17558151 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr25:13782873-13783077 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 459-660 |
| Cow position: | chr25:13958633-13958838 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-660 |
| Cow position: | chr25:19408869-19409074 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 459-660 |
| Cow position: | chr25:22149382-22149584 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 459-660 |
| Cow position: | chr25:34506259-34506054 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-687 |
| Cow position: | chr25:14538102-14537868 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-688 |
| Cow position: | chr25:16448838-16448604 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 182 |
| Conread position: | 460-661 |
| Cow position: | chr25:30148904-30148699 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 460-685 |
| Cow position: | chr25:30313629-30313398 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 461-654 |
| Cow position: | chr25:39556005-39555814 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 461-687 |
| Cow position: | chr25:29358587-29358820 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 462-660 |
| Cow position: | chr25:10134927-10135110 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 462-688 |
| Cow position: | chr25:18451404-18451637 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 463-688 |
| Cow position: | chr25:35588505-35588276 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 464-648 |
| Cow position: | chr25:37466972-37467158 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 474-660 |
| Cow position: | chr25:10297170-10297356 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-649 |
| Cow position: | chr25:3375120-3374969 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 530-659 |
| Cow position: | chr25:13964914-13965037 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 548-657 |
| Cow position: | chr25:21902911-21903020 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.