Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 198-460 |
| Cow position: | chr26:14506748-14506476 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 143, 212 |
| Conread position: | 204-660 |
| Cow position: | chr26:34013236-34013704 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 212 |
| Conread position: | 207-370 |
| Cow position: | chr26:35369518-35369681 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-532 |
| Cow position: | chr26:3029257-3028929 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 221, 154 |
| Conread position: | 207-658 |
| Cow position: | chr26:5676713-5677172 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-658 |
| Cow position: | chr26:8086681-8087118 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 268, 134 |
| Conread position: | 207-660 |
| Cow position: | chr26:2200210-2200650 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 255, 97 |
| Conread position: | 207-660 |
| Cow position: | chr26:12586972-12586512 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 156 |
| Conread position: | 207-660 |
| Cow position: | chr26:14895528-14895983 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 40 |
| Conread position: | 207-660 |
| Cow position: | chr26:17395330-17394874 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 75 |
| Conread position: | 207-660 |
| Cow position: | chr26:30784327-30784786 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 207-687 |
| Cow position: | chr26:2350615-2350128 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 12 |
| Conread position: | 207-687 |
| Cow position: | chr26:9113463-9113948 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 156 |
| Conread position: | 207-687 |
| Cow position: | chr26:19349931-19349448 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-690 |
| Cow position: | chr26:8871415-8871907 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 156 |
| Conread position: | 209-651 |
| Cow position: | chr26:17322219-17322671 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 211-641 |
| Cow position: | chr26:8282237-8281811 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 247, 109 |
| Conread position: | 211-660 |
| Cow position: | chr26:21825097-21824640 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 77 |
| Conread position: | 232-660 |
| Cow position: | chr26:30587765-30587331 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 169, 137 |
| Conread position: | 232-687 |
| Cow position: | chr26:9842804-9842348 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 119 |
| Conread position: | 243-657 |
| Cow position: | chr26:21007759-21008184 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 167, 150 |
| Conread position: | 257-687 |
| Cow position: | chr26:9560955-9560516 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 265-660 |
| Cow position: | chr26:27989628-27989233 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 175, 104 |
| Conread position: | 294-651 |
| Cow position: | chr26:13773224-13772863 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 116, 75 |
| Conread position: | 382-660 |
| Cow position: | chr26:6081669-6081367 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 384-660 |
| Cow position: | chr26:35101500-35101800 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 70, 259 |
| Conread position: | 394-660 |
| Cow position: | chr26:616511-616228 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 454-687 |
| Cow position: | chr26:17325975-17326214 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 139 |
| Conread position: | 459-616 |
| Cow position: | chr26:14506456-14506295 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 459-649 |
| Cow position: | chr26:13194659-13194468 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 132 |
| Conread position: | 459-660 |
| Cow position: | chr26:4327610-4327406 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr26:6817480-6817685 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr26:898226-898459 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 459-687 |
| Cow position: | chr26:3226253-3226021 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr26:3250729-3250495 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr26:6847622-6847376 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 459-687 |
| Cow position: | chr26:15552321-15552099 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 202, 50 |
| Conread position: | 459-687 |
| Cow position: | chr26:23888229-23888460 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 459-693 |
| Cow position: | chr26:577473-577233 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 460-660 |
| Cow position: | chr26:11288089-11288290 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 462-662 |
| Cow position: | chr26:881050-881252 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 181 |
| Conread position: | 462-685 |
| Cow position: | chr26:33934153-33934379 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 477-636 |
| Cow position: | chr26:8215882-8215725 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 477-660 |
| Cow position: | chr26:14366403-14366206 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 484-636 |
| Cow position: | chr26:13801056-13801205 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 500-660 |
| Cow position: | chr26:12667308-12667471 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 506-660 |
| Cow position: | chr26:35561068-35561226 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 128 |
| Conread position: | 512-687 |
| Cow position: | chr26:4603285-4603105 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 513-647 |
| Cow position: | chr26:26307777-26307643 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-687 |
| Cow position: | chr26:15145115-15145288 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 549-687 |
| Cow position: | chr26:3028724-3028584 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
Show alignments to all cow chromosomes.