Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C110032.5 |
| Conread position: | 197-660 |
| Cow position: | chr27:3234008-3233542 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 197-660 |
| Cow position: | chr27:25085067-25085547 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 60 |
| Conread position: | 197-687 |
| Cow position: | chr27:12748550-12749049 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 204-660 |
| Cow position: | chr27:9991695-9991232 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 206-367 |
| Cow position: | chr27:15274544-15274383 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 155, 85 |
| Conread position: | 206-420 |
| Cow position: | chr27:6160346-6160135 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 210, 153 |
| Conread position: | 207-362 |
| Cow position: | chr27:1900514-1900359 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-370 |
| Cow position: | chr27:29056684-29056847 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-633 |
| Cow position: | chr27:167404-166975 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 162 |
| Conread position: | 207-660 |
| Cow position: | chr27:1210880-1211340 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr27:1677047-1676592 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 203, 14 |
| Conread position: | 207-660 |
| Cow position: | chr27:4980896-4981352 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-660 |
| Cow position: | chr27:16032879-16032421 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 156 |
| Conread position: | 207-660 |
| Cow position: | chr27:25803172-25802711 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 207-687 |
| Cow position: | chr27:5912442-5912925 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 207-687 |
| Cow position: | chr27:26326585-26327064 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-687 |
| Cow position: | chr27:27664519-27665004 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 207-688 |
| Cow position: | chr27:25034890-25034422 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 307 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 191, 13 |
| Conread position: | 208-687 |
| Cow position: | chr27:798042-797555 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 155 |
| Conread position: | 210-687 |
| Cow position: | chr27:15035584-15035097 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 183 |
| Conread position: | 213-466 |
| Cow position: | chr27:15373367-15373610 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 232-660 |
| Cow position: | chr27:26553892-26553455 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 240-651 |
| Cow position: | chr27:28930678-28930269 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 152, 32 |
| Conread position: | 255-458 |
| Cow position: | chr27:6015989-6016181 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 455-660 |
| Cow position: | chr27:13168605-13168810 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 456-613 |
| Cow position: | chr27:16264294-16264132 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 457-654 |
| Cow position: | chr27:6016201-6016401 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 79, 141 |
| Conread position: | 459-586 |
| Cow position: | chr27:23216280-23216149 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 459-619 |
| Cow position: | chr27:23319182-23319018 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-648 |
| Cow position: | chr27:15274291-15274103 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 459-657 |
| Cow position: | chr27:8590854-8591056 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-659 |
| Cow position: | chr27:9331520-9331724 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 459-660 |
| Cow position: | chr27:10377518-10377724 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 459-660 |
| Cow position: | chr27:28893384-28893579 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 459-661 |
| Cow position: | chr27:9386854-9387058 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 459-666 |
| Cow position: | chr27:11487045-11487243 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 459-682 |
| Cow position: | chr27:15373623-15373849 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 149 |
| Conread position: | 459-685 |
| Cow position: | chr27:15635564-15635332 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 459-687 |
| Cow position: | chr27:160760-160993 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 78, 58 |
| Conread position: | 459-687 |
| Cow position: | chr27:22743616-22743382 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 459-687 |
| Cow position: | chr27:27288274-27288506 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 460-705 |
| Cow position: | chr27:19691646-19691401 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 462-660 |
| Cow position: | chr27:21285412-21285216 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 139 |
| Conread position: | 462-660 |
| Cow position: | chr27:24574319-24574118 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 463-648 |
| Cow position: | chr27:23293322-23293510 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 170 |
| Conread position: | 468-660 |
| Cow position: | chr27:5995681-5995489 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 484-660 |
| Cow position: | chr27:6375456-6375276 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 498-687 |
| Cow position: | chr27:11432938-11433133 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-660 |
| Cow position: | chr27:3990824-3990991 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 548-660 |
| Cow position: | chr27:4333169-4333057 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 552-660 |
| Cow position: | chr27:19524847-19524739 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.