Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 197-352
Cow position: chr28:13604317-13604469 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 197-389
Cow position: chr28:5803578-5803768 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 91, 0

Conread position: 197-653
Cow position: chr28:23023784-23024241 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 296
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 243, 163

Conread position: 197-687
Cow position: chr28:5939046-5939538 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 317
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 103, 87

Conread position: 197-687
Cow position: chr28:18518889-18518386 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 321
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 103, 87

Conread position: 198-332
Cow position: chr28:15587629-15587761 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 198-394
Cow position: chr28:24559160-24559352 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 198-660
Cow position: chr28:1385852-1385382 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 308
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 6

Conread position: 204-421
Cow position: chr28:21567007-21567222 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 176, 55

Conread position: 205-357
Cow position: chr28:9295789-9295640 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 112

Conread position: 205-649
Cow position: chr28:15574696-15575123 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 289
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 277, 5

Conread position: 205-659
Cow position: chr28:32304680-32304224 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 309
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 121, 105

Conread position: 205-660
Cow position: chr28:15673898-15674346 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 293
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 196, 52

Conread position: 205-660
Cow position: chr28:31850386-31849907 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 127

Conread position: 206-460
Cow position: chr28:10650961-10650714 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 223, 153

Conread position: 207-573
Cow position: chr28:9288515-9288887 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 246
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 221, 154

Conread position: 207-600
Cow position: chr28:7059100-7058700 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 266
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 222, 162

Conread position: 207-657
Cow position: chr28:6537242-6536780 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-658
Cow position: chr28:6350392-6350852 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 291
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 159, 73

Conread position: 207-658
Cow position: chr28:7028214-7027757 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 291
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 237, 170

Conread position: 207-658
Cow position: chr28:24669166-24669617 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 295
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 222, 50

Conread position: 207-658
Cow position: chr28:26424694-26424235 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 172

Conread position: 207-659
Cow position: chr28:33638112-33638566 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:784225-784690 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 309
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:1506434-1506888 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 311
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 201, 162

Conread position: 207-660
Cow position: chr28:2086033-2086489 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:3190684-3190224 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:5750135-5749674 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 65

Conread position: 207-660
Cow position: chr28:6778373-6777913 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-660
Cow position: chr28:7003564-7004024 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:8719388-8718937 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 69

Conread position: 207-660
Cow position: chr28:13461539-13461989 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr28:21361061-21361522 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 207-660
Cow position: chr28:24590425-24590880 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 120

Conread position: 207-660
Cow position: chr28:32790826-32790370 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 300
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 93, 17

Conread position: 207-686
Cow position: chr28:8380605-8381092 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr28:484026-483537 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-687
Cow position: chr28:1166326-1165841 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 207-687
Cow position: chr28:1459663-1460152 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 162

Conread position: 207-687
Cow position: chr28:1954923-1955414 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-687
Cow position: chr28:7742000-7742483 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 332
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 37, 66

Conread position: 207-687
Cow position: chr28:14703815-14703327 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 312
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 213, 257

Conread position: 207-687
Cow position: chr28:15034543-15034054 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 147

Conread position: 207-687
Cow position: chr28:17389969-17390459 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 208-657
Cow position: chr28:31591128-31591582 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 155

Conread position: 209-660
Cow position: chr28:34202083-34201631 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 319
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 163, 107

Conread position: 210-430
Cow position: chr28:8784886-8785088 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 210-659
Cow position: chr28:10615431-10614984 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 296
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 144, 83

Conread position: 211-660
Cow position: chr28:1813361-1812912 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 83

Conread position: 211-660
Cow position: chr28:10580302-10579847 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 304
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 75, 160

Conread position: 211-660
Cow position: chr28:33253886-33254337 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 299
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 73

Conread position: 222-660
Cow position: chr28:12151908-12152347 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 62

Conread position: 222-687
Cow position: chr28:12408644-12408166 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 223-687
Cow position: chr28:24884439-24884902 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 5

Conread position: 306-688
Cow position: chr28:8785089-8785489 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 203

Conread position: 349-688
Cow position: chr28:759507-759162 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 11

Conread position: 366-660
Cow position: chr28:28440451-28440763 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 385-664
Cow position: chr28:11953709-11953992 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 88

Conread position: 454-660
Cow position: chr28:11504422-11504210 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 89, 7

Conread position: 459-609
Cow position: chr28:13604781-13604935 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 459-651
Cow position: chr28:10495678-10495484 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 26

Conread position: 459-660
Cow position: chr28:308019-307813 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 0

Conread position: 459-660
Cow position: chr28:5567974-5568178 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 72, 178

Conread position: 459-660
Cow position: chr28:10471475-10471673 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 459-660
Cow position: chr28:17665504-17665300 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 459-660
Cow position: chr28:21378348-21378554 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 459-665
Cow position: chr28:2121276-2121485 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 65, 201

Conread position: 459-669
Cow position: chr28:22231469-22231254 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 79, 89

Conread position: 459-687
Cow position: chr28:17630922-17631156 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr28:23311485-23311259 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 202, 64

Conread position: 459-687
Cow position: chr28:30805583-30805817 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 78, 0

Conread position: 459-688
Cow position: chr28:1773207-1773427 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 56

Conread position: 460-641
Cow position: chr28:26987160-26986980 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 38

Conread position: 460-652
Cow position: chr28:15998927-15999123 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 77, 0

Conread position: 460-660
Cow position: chr28:9180699-9180889 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 460-660
Cow position: chr28:12422803-12422606 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 13

Conread position: 460-660
Cow position: chr28:27957894-27957692 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 86

Conread position: 460-687
Cow position: chr28:5209935-5210168 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 83, 0

Conread position: 461-658
Cow position: chr28:22259332-22259128 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 461-676
Cow position: chr28:1216014-1215797 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 87, 0

Conread position: 463-687
Cow position: chr28:10293286-10293520 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 10

Conread position: 463-687
Cow position: chr28:21567724-21567948 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 73, 14

Conread position: 466-649
Cow position: chr28:9295256-9295071 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 77, 22

Conread position: 466-660
Cow position: chr28:15940149-15939954 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 91, 151

Conread position: 466-676
Cow position: chr28:5766570-5766782 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 30

Conread position: 484-687
Cow position: chr28:10644622-10644411 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 117

Conread position: 513-660
Cow position: chr28:25761344-25761485 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 523-660
Cow position: chr28:19192987-19193117 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 548-660
Cow position: chr28:5815165-5815277 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 548-687
Cow position: chr28:15918613-15918472 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 549-660
Cow position: chr28:3014054-3013944 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 560-676
Cow position: chr28:7828416-7828532 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 560-687
Cow position: chr28:34596176-34596304 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 32

Show alignments to all cow chromosomes.