Cow genome map

Conread name: Ss1.1-LyN1-MLN01C110032.5

Conread position: 197-660
Cow position: chr29:14210030-14209559 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 308
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 103, 87

Conread position: 197-660
Cow position: chr29:16172580-16172113 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 297
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 213, 30

Conread position: 197-660
Cow position: chr29:19526764-19526294 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 166

Conread position: 197-660
Cow position: chr29:20252687-20253160 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 87

Conread position: 197-687
Cow position: chr29:2746940-2746430 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 129

Conread position: 197-687
Cow position: chr29:7845912-7846410 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 166

Conread position: 197-687
Cow position: chr29:13018220-13018711 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 331
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 221, 20

Conread position: 198-370
Cow position: chr29:4633110-4632947 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 168, 113

Conread position: 206-660
Cow position: chr29:43325047-43325506 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 78

Conread position: 207-648
Cow position: chr29:19889118-19889560 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 284
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 151, 232

Conread position: 207-648
Cow position: chr29:21431320-21430875 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 162

Conread position: 207-658
Cow position: chr29:32287781-32288234 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 298
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 233, 28

Conread position: 207-660
Cow position: chr29:46928-46470 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 307
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 93, 40

Conread position: 207-660
Cow position: chr29:609116-608656 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-660
Cow position: chr29:2465344-2464885 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 305
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 82, 65

Conread position: 207-660
Cow position: chr29:2948848-2948382 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 298
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 90, 78

Conread position: 207-660
Cow position: chr29:6264468-6264011 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 77

Conread position: 207-660
Cow position: chr29:9641253-9640788 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 302
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 191, 171

Conread position: 207-660
Cow position: chr29:10822386-10821928 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 323
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 241, 65

Conread position: 207-660
Cow position: chr29:13583613-13584073 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 156

Conread position: 207-660
Cow position: chr29:25930989-25930527 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-660
Cow position: chr29:32558219-32557760 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 257

Conread position: 207-660
Cow position: chr29:34798279-34797817 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 89

Conread position: 207-661
Cow position: chr29:15946297-15945828 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 312
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 182, 87

Conread position: 207-685
Cow position: chr29:16345744-16346220 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 89

Conread position: 207-687
Cow position: chr29:10022800-10022311 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 162

Conread position: 207-687
Cow position: chr29:13622326-13621837 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 156

Conread position: 207-687
Cow position: chr29:19655152-19655639 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 329
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 82, 77

Conread position: 207-687
Cow position: chr29:31182934-31183423 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-687
Cow position: chr29:32541626-32542115 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 207-687
Cow position: chr29:35298442-35298931 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 156

Conread position: 207-687
Cow position: chr29:38207132-38206642 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 156

Conread position: 207-687
Cow position: chr29:40501475-40500993 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 162

Conread position: 207-687
Cow position: chr29:45624924-45625408 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 314
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 147, 19

Conread position: 207-695
Cow position: chr29:39078179-39077682 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 162

Conread position: 208-660
Cow position: chr29:801054-800621 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 297
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 330, 107

Conread position: 208-660
Cow position: chr29:8665038-8665495 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 294
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 174, 274

Conread position: 210-650
Cow position: chr29:2691697-2692144 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 303
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 85, 74

Conread position: 211-639
Cow position: chr29:13851335-13850913 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 282
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 199, 113

Conread position: 211-659
Cow position: chr29:26163297-26162845 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 73

Conread position: 211-660
Cow position: chr29:2839807-2839349 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 213-660
Cow position: chr29:19621734-19621275 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 59

Conread position: 218-457
Cow position: chr29:17151790-17152015 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 186
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 221-654
Cow position: chr29:36596527-36596094 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 282
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 238, 71

Conread position: 221-660
Cow position: chr29:6214045-6214480 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 292
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 34, 153

Conread position: 222-690
Cow position: chr29:10645863-10645387 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 62

Conread position: 226-660
Cow position: chr29:45206082-45206499 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 21

Conread position: 227-658
Cow position: chr29:409707-409272 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 57

Conread position: 232-660
Cow position: chr29:17406682-17407117 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 27

Conread position: 232-687
Cow position: chr29:7429563-7429101 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 40

Conread position: 238-660
Cow position: chr29:29704103-29703668 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 272
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 149, 226

Conread position: 239-660
Cow position: chr29:14452431-14452848 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 276
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 40

Conread position: 241-660
Cow position: chr29:37044674-37044271 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 270
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 147, 47

Conread position: 274-654
Cow position: chr29:12794079-12794463 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 89

Conread position: 384-687
Cow position: chr29:16688526-16688851 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 59, 183

Conread position: 459-654
Cow position: chr29:4517387-4517578 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 77, 150

Conread position: 459-654
Cow position: chr29:16014517-16014316 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 79, 185

Conread position: 459-656
Cow position: chr29:5980927-5980721 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 51, 96

Conread position: 459-656
Cow position: chr29:9082098-9081898 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 14

Conread position: 459-658
Cow position: chr29:131311-131511 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 459-658
Cow position: chr29:21421911-21421710 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 107

Conread position: 459-659
Cow position: chr29:16081494-16081290 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 459-660
Cow position: chr29:2101625-2101831 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 79, 0

Conread position: 459-660
Cow position: chr29:7751056-7750851 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 12

Conread position: 459-660
Cow position: chr29:22951388-22951182 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 459-660
Cow position: chr29:29617522-29617316 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 459-660
Cow position: chr29:31122615-31122823 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 0

Conread position: 459-660
Cow position: chr29:34526402-34526606 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 12

Conread position: 459-660
Cow position: chr29:35275408-35275204 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 79, 156

Conread position: 459-669
Cow position: chr29:31095791-31095591 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 30

Conread position: 459-687
Cow position: chr29:5959625-5959861 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 24

Conread position: 459-687
Cow position: chr29:8625408-8625171 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 80, 0

Conread position: 459-687
Cow position: chr29:13922287-13922521 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 78, 0

Conread position: 459-687
Cow position: chr29:27978043-27977808 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 26, 186

Conread position: 459-688
Cow position: chr29:9853302-9853071 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 219, 0

Conread position: 460-687
Cow position: chr29:38228765-38228996 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 78, 37

Conread position: 461-660
Cow position: chr29:32583205-32583004 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 95

Conread position: 461-661
Cow position: chr29:42805201-42805401 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 12, 95

Conread position: 461-663
Cow position: chr29:25936392-25936595 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 198, 0

Conread position: 462-660
Cow position: chr29:21536064-21536265 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 74, 90

Conread position: 463-660
Cow position: chr29:32038620-32038820 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 465-660
Cow position: chr29:32642032-32642220 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 32

Conread position: 466-659
Cow position: chr29:14082931-14082737 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 466-660
Cow position: chr29:15996591-15996393 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 77, 0

Conread position: 474-634
Cow position: chr29:45223173-45223337 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 494-660
Cow position: chr29:21252870-21252705 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 106

Conread position: 506-687
Cow position: chr29:13606081-13605894 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 506-688
Cow position: chr29:19731911-19732096 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 133

Conread position: 522-658
Cow position: chr29:17976322-17976462 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 523-660
Cow position: chr29:35003564-35003428 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 528-687
Cow position: chr29:16037692-16037531 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 150, 0

Conread position: 531-683
Cow position: chr29:32961175-32961327 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 107, 9

Conread position: 548-659
Cow position: chr29:6933377-6933488 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 548-660
Cow position: chr29:15118024-15118136 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 549-687
Cow position: chr29:40470300-40470439 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 129, 12

Conread position: 552-687
Cow position: chr29:15261112-15260975 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 0

Conread position: 553-687
Cow position: chr29:24650674-24650811 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 560-687
Cow position: chr29:23978594-23978723 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Show alignments to all cow chromosomes.