Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 930-1323 |
| Cow position: | chr17:22589601-22589205 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 193, 223 |
| Conread position: | 930-1390 |
| Cow position: | chr17:22589685-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 302 |
| Conread position: | 930-1446 |
| Cow position: | chr17:22552015-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 193, 305 |
| Conread position: | 930-1474 |
| Cow position: | chr17:22452300-22451753 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 930-1505 |
| Cow position: | chr17:22499230-22498652 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 192, 215 |
| Conread position: | 930-1506 |
| Cow position: | chr17:22552855-22552276 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 268 |
| Conread position: | 930-1521 |
| Cow position: | chr17:22552435-22551841 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 305 |
| Conread position: | 930-1521 |
| Cow position: | chr17:22552771-22552177 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 172 |
| Conread position: | 930-1523 |
| Cow position: | chr17:22552099-22551503 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 299 |
| Conread position: | 930-1523 |
| Cow position: | chr17:22552351-22551755 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 302 |
| Conread position: | 930-1523 |
| Cow position: | chr17:22589853-22589257 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 362 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 193, 237 |
| Conread position: | 930-1523 |
| Cow position: | chr17:22590021-22589425 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 363 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 193, 305 |
| Conread position: | 930-1523 |
| Cow position: | chr17:22590189-22589593 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 193, 299 |
| Conread position: | 930-1525 |
| Cow position: | chr17:22552267-22551669 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 313 |
| Conread position: | 930-1525 |
| Cow position: | chr17:22590105-22589507 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 365 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 193, 299 |
| Conread position: | 931-1446 |
| Cow position: | chr17:22499061-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 154, 179 |
| Conread position: | 932-1274 |
| Cow position: | chr17:41440536-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 191, 309 |
| Conread position: | 932-1389 |
| Cow position: | chr17:22473501-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 191, 214 |
| Conread position: | 932-1466 |
| Cow position: | chr17:22452214-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 168 |
| Conread position: | 932-1467 |
| Cow position: | chr17:22499312-22498774 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 932-1517 |
| Cow position: | chr17:41440954-41440368 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 190, 6 |
| Conread position: | 932-1523 |
| Cow position: | chr17:22499144-22498550 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 372 |
| Conread position: | 932-1523 |
| Cow position: | chr17:22552517-22551923 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 144 |
| Conread position: | 932-1523 |
| Cow position: | chr17:22552937-22552343 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 932-1523 |
| Cow position: | chr17:44467441-44468033 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 363 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 186, 6 |
| Conread position: | 932-1523 |
| Cow position: | chr17:44467691-44468285 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 349 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 191, 213 |
| Conread position: | 933-1440 |
| Cow position: | chr17:22452129-22451619 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 191, 299 |
| Conread position: | 935-1521 |
| Cow position: | chr17:22499393-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 141 |
| Conread position: | 935-1523 |
| Cow position: | chr17:22473336-22473928 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 295 |
| Conread position: | 948-1489 |
| Cow position: | chr17:22590255-22589710 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 388 |
| Conread position: | 949-1523 |
| Cow position: | chr17:22473266-22473843 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 353 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 950-1523 |
| Cow position: | chr17:22553003-22552427 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 279 |
| Conread position: | 956-1474 |
| Cow position: | chr17:41440848-41440327 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 291 |
| Conread position: | 956-1512 |
| Cow position: | chr17:22452358-22451799 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 956-1524 |
| Cow position: | chr17:41441016-41440445 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 958-1446 |
| Cow position: | chr17:41440678-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 164, 275 |
| Conread position: | 990-1515 |
| Cow position: | chr17:22553131-22552603 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 132, 242 |
| Conread position: | 998-1523 |
| Cow position: | chr17:44467421-44467949 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 311 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 118, 244 |
| Conread position: | 1010-1549 |
| Cow position: | chr17:44467853-44468390 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 113, 502 |
| Conread position: | 1014-1515 |
| Cow position: | chr17:22499398-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 307 |
| Conread position: | 1025-1452 |
| Cow position: | chr17:44467364-44467794 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 98, 288 |
| Conread position: | 1100-1523 |
| Cow position: | chr17:22499396-22498970 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1109-1523 |
| Cow position: | chr17:22452373-22451956 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 195 |
| Conread position: | 1119-1523 |
| Cow position: | chr17:44467377-44467781 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1122-1474 |
| Cow position: | chr17:41441099-41440747 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 116 |
| Conread position: | 1127-1523 |
| Cow position: | chr17:22553074-22552679 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 108, 9 |
| Conread position: | 1152-1468 |
| Cow position: | chr17:22452411-22452095 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 1193-1523 |
| Cow position: | chr17:22553093-22552763 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 1198-1523 |
| Cow position: | chr17:41441107-41440782 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 1199-1523 |
| Cow position: | chr17:22590253-22589929 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 1265-1523 |
| Cow position: | chr17:22553105-22552847 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 92, 97 |
Show alignments to all cow chromosomes.