Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 236-499 |
| Cow position: | chr19:23639991-23640254 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 207, 217 |
| Conread position: | 236-503 |
| Cow position: | chr19:14951296-14951029 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 805-1408 |
| Cow position: | chr19:14948593-14947988 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 920-1475 |
| Cow position: | chr19:20677519-20678077 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 928-1358 |
| Cow position: | chr19:14959246-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 197, 128 |
| Conread position: | 928-1523 |
| Cow position: | chr19:23649298-23649896 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 362 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 193, 313 |
| Conread position: | 930-1186 |
| Cow position: | chr19:23597447-23597706 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 191, 217 |
| Conread position: | 930-1438 |
| Cow position: | chr19:14940574-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 930-1477 |
| Cow position: | chr19:20677613-20678163 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 312 |
| Conread position: | 930-1506 |
| Cow position: | chr19:23596946-23597522 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 86 |
| Conread position: | 930-1514 |
| Cow position: | chr19:23649552-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 174 |
| Conread position: | 930-1519 |
| Cow position: | chr19:14960309-14959720 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 114 |
| Conread position: | 930-1523 |
| Cow position: | chr19:20678033-20678629 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 179 |
| Conread position: | 930-1523 |
| Cow position: | chr19:23614186-23614782 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 366 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 193, 301 |
| Conread position: | 930-1523 |
| Cow position: | chr19:23649468-23650064 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 300 |
| Conread position: | 930-1526 |
| Cow position: | chr19:14960477-14959880 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 326 |
| Conread position: | 931-1523 |
| Cow position: | chr19:23596863-23597455 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 171 |
| Conread position: | 932-1272 |
| Cow position: | chr19:23614776-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 184, 328 |
| Conread position: | 932-1350 |
| Cow position: | chr19:23650058-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1377 |
| Cow position: | chr19:23597281-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 296 |
| Conread position: | 932-1424 |
| Cow position: | chr19:23614608-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 178, 153 |
| Conread position: | 932-1445 |
| Cow position: | chr19:20635549-20635033 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 299 |
| Conread position: | 932-1500 |
| Cow position: | chr19:20677699-20678270 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 189, 247 |
| Conread position: | 932-1506 |
| Cow position: | chr19:23614524-23615101 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 297 |
| Conread position: | 932-1513 |
| Cow position: | chr19:14940492-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1515 |
| Cow position: | chr19:23649890-23650476 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1515 |
| Cow position: | chr19:43570224-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 357 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 191, 297 |
| Conread position: | 932-1521 |
| Cow position: | chr19:14939988-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 297 |
| Conread position: | 932-1521 |
| Cow position: | chr19:20635633-20635039 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 296 |
| Conread position: | 932-1521 |
| Cow position: | chr19:23613516-23614108 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 297 |
| Conread position: | 932-1521 |
| Cow position: | chr19:23614440-23615032 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 192, 458 |
| Conread position: | 932-1522 |
| Cow position: | chr19:23597113-23597706 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 309 |
| Conread position: | 932-1523 |
| Cow position: | chr19:14940240-14940834 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 294 |
| Conread position: | 932-1523 |
| Cow position: | chr19:14959569-14958990 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 258 |
| Conread position: | 932-1523 |
| Cow position: | chr19:14959889-14959311 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 374 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 130, 76 |
| Conread position: | 932-1523 |
| Cow position: | chr19:23613684-23614278 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 153 |
| Conread position: | 932-1523 |
| Cow position: | chr19:23613768-23614362 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 246 |
| Conread position: | 932-1523 |
| Cow position: | chr19:23614020-23614614 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 370 |
| Conread position: | 932-1523 |
| Cow position: | chr19:23614104-23614698 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 356 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 192, 235 |
| Conread position: | 932-1523 |
| Cow position: | chr19:23649638-23650232 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 540 |
| Conread position: | 932-1525 |
| Cow position: | chr19:23649722-23650318 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 372 |
| Conread position: | 932-1526 |
| Cow position: | chr19:14959485-14958903 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 306, 165 |
| Conread position: | 933-1473 |
| Cow position: | chr19:20678120-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 934-1487 |
| Cow position: | chr19:23613434-23613990 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 412 |
| Conread position: | 934-1523 |
| Cow position: | chr19:23613350-23613942 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 370 |
| Conread position: | 934-1523 |
| Cow position: | chr19:23649388-23649980 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 303 |
| Conread position: | 935-1434 |
| Cow position: | chr19:23649975-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 935-1521 |
| Cow position: | chr19:23614275-23614864 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 186 |
| Conread position: | 949-1445 |
| Cow position: | chr19:23597214-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 949-1470 |
| Cow position: | chr19:14959636-14959121 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 949-1525 |
| Cow position: | chr19:14960374-14959799 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 225 |
| Conread position: | 955-1523 |
| Cow position: | chr19:14940431-14941002 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 282 |
| Conread position: | 955-1523 |
| Cow position: | chr19:23597052-23597623 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 110 |
| Conread position: | 956-1523 |
| Cow position: | chr19:14940180-14940750 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 272 |
| Conread position: | 959-1523 |
| Cow position: | chr19:43570278-43569716 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 353 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 164, 20 |
| Conread position: | 997-1515 |
| Cow position: | chr19:23649283-23649804 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1003-1467 |
| Cow position: | chr19:14948479-14948013 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 1004-1434 |
| Cow position: | chr19:14959254-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 235, 121 |
| Conread position: | 1122-1522 |
| Cow position: | chr19:14959217-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 375, 98 |
| Conread position: | 1124-1523 |
| Cow position: | chr19:20635606-20635207 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 184, 178 |
| Conread position: | 1124-1525 |
| Cow position: | chr19:14940015-14940416 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 374 |
| Conread position: | 1130-1512 |
| Cow position: | chr19:14948433-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 202, 30 |
| Conread position: | 1175-1523 |
| Cow position: | chr19:20635639-20635291 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 337, 328 |
| Conread position: | 1176-1523 |
| Cow position: | chr19:23649297-23649644 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 129 |
| Conread position: | 1177-1521 |
| Cow position: | chr19:20677527-20677871 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 1190-1523 |
| Cow position: | chr19:14939997-14940330 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 1194-1523 |
| Cow position: | chr19:14948453-14948125 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 1255-1523 |
| Cow position: | chr19:23649292-23649560 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 223, 231 |
Show alignments to all cow chromosomes.