Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 248-425 |
| Cow position: | chr2:84896566-84896389 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 72 |
| Conread position: | 248-425 |
| Cow position: | chr2:86507719-86507543 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 920-1485 |
| Cow position: | chr2:78755405-78755970 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 173, 108 |
| Conread position: | 929-1398 |
| Cow position: | chr2:48689547-48689075 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 930-1477 |
| Cow position: | chr2:86465598-86466148 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 339 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 930-1501 |
| Cow position: | chr2:5874682-5874108 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 348 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 192, 226 |
| Conread position: | 930-1506 |
| Cow position: | chr2:78755748-78756326 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 930-1515 |
| Cow position: | chr2:78754912-78755499 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 222 |
| Conread position: | 930-1515 |
| Cow position: | chr2:82799858-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 930-1521 |
| Cow position: | chr2:78755164-78755754 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 193, 172 |
| Conread position: | 930-1523 |
| Cow position: | chr2:5875018-5874422 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 370 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 107, 113 |
| Conread position: | 930-1523 |
| Cow position: | chr2:78754828-78755423 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 298 |
| Conread position: | 932-1468 |
| Cow position: | chr2:86465768-86466305 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 191, 431 |
| Conread position: | 932-1473 |
| Cow position: | chr2:86465348-86465892 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 932-1512 |
| Cow position: | chr2:5874932-5874349 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 360 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 144 |
| Conread position: | 932-1515 |
| Cow position: | chr2:82799524-82800110 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 932-1521 |
| Cow position: | chr2:82799776-82800368 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 932-1523 |
| Cow position: | chr2:5875100-5874506 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 368 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 932-1523 |
| Cow position: | chr2:82799608-82800202 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 401 |
| Conread position: | 932-1523 |
| Cow position: | chr2:82799692-82800286 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 383 |
| Conread position: | 947-1517 |
| Cow position: | chr2:82799455-82800028 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 294 |
| Conread position: | 949-1476 |
| Cow position: | chr2:86465113-86465642 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 356 |
| Conread position: | 949-1523 |
| Cow position: | chr2:78755517-78756093 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 165, 292 |
| Conread position: | 950-1521 |
| Cow position: | chr2:5874830-5874256 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 348 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 114, 118 |
| Conread position: | 954-1525 |
| Cow position: | chr2:86465286-86465860 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 322 |
| Conread position: | 955-1523 |
| Cow position: | chr2:78755857-78756425 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 165, 179 |
| Conread position: | 956-1523 |
| Cow position: | chr2:86465036-86465606 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 87 |
| Conread position: | 959-1467 |
| Cow position: | chr2:78754203-78754711 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 171, 240 |
| Conread position: | 959-1523 |
| Cow position: | chr2:86465543-86466110 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 341 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 47, 52 |
| Conread position: | 997-1506 |
| Cow position: | chr2:78754811-78755323 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 125, 232 |
| Conread position: | 1020-1465 |
| Cow position: | chr2:5875180-5874732 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1043-1525 |
| Cow position: | chr2:82799467-82799952 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1124-1474 |
| Cow position: | chr2:48689516-48689167 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1166-1473 |
| Cow position: | chr2:48689391-48689085 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 150, 144 |
| Conread position: | 1169-1519 |
| Cow position: | chr2:48689558-48689205 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 1194-1525 |
| Cow position: | chr2:86465109-86465440 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 31 |
Show alignments to all cow chromosomes.