Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 235-498 |
| Cow position: | chr22:12537799-12538062 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-505 |
| Cow position: | chr22:12443182-12442912 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-508 |
| Cow position: | chr22:12485096-12484824 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 920-1523 |
| Cow position: | chr22:46654167-46654773 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 929-1207 |
| Cow position: | chr22:12419301-12419020 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 930-1515 |
| Cow position: | chr22:12476225-12475637 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 552 |
| Conread position: | 930-1515 |
| Cow position: | chr22:12499034-12499622 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 400 |
| Conread position: | 930-1521 |
| Cow position: | chr22:12385504-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 930-1521 |
| Cow position: | chr22:12458528-12457934 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 930-1523 |
| Cow position: | chr22:12385588-12384990 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 931-1523 |
| Cow position: | chr22:12432079-12431484 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 361 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 193, 297 |
| Conread position: | 931-1523 |
| Cow position: | chr22:12432499-12431904 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 309 |
| Conread position: | 932-1123 |
| Cow position: | chr22:12418609-12418419 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 932-1358 |
| Cow position: | chr22:12499540-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1391 |
| Cow position: | chr22:14468057-14468519 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 191, 210 |
| Conread position: | 932-1391 |
| Cow position: | chr22:14468141-14468603 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 141, 127 |
| Conread position: | 932-1445 |
| Cow position: | chr22:12475803-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 178 |
| Conread position: | 932-1446 |
| Cow position: | chr22:12431490-12430973 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1447 |
| Cow position: | chr22:11640940-11641458 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 193, 397 |
| Conread position: | 932-1454 |
| Cow position: | chr22:14430400-14430925 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 325 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 932-1462 |
| Cow position: | chr22:12431238-12430705 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1473 |
| Cow position: | chr22:12499372-12499916 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1473 |
| Cow position: | chr22:46654095-46654639 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 932-1474 |
| Cow position: | chr22:12399678-12399133 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1515 |
| Cow position: | chr22:11640856-11641442 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 314 |
| Conread position: | 932-1521 |
| Cow position: | chr22:12399342-12398750 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 321 |
| Conread position: | 932-1521 |
| Cow position: | chr22:12476307-12475715 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 128 |
| Conread position: | 932-1521 |
| Cow position: | chr22:12498952-12499544 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 128 |
| Conread position: | 932-1523 |
| Cow position: | chr22:11640772-11641366 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 299 |
| Conread position: | 932-1523 |
| Cow position: | chr22:12399426-12398832 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 398 |
| Conread position: | 932-1523 |
| Cow position: | chr22:12432162-12431568 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1523 |
| Cow position: | chr22:12432414-12431820 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 193, 372 |
| Conread position: | 932-1523 |
| Cow position: | chr22:14429644-14430238 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 123, 133 |
| Conread position: | 932-1523 |
| Cow position: | chr22:14430232-14430826 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 932-1523 |
| Cow position: | chr22:14430316-14430910 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 932-1523 |
| Cow position: | chr22:46654263-46654858 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 189, 295 |
| Conread position: | 932-1525 |
| Cow position: | chr22:12399762-12399166 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 398 |
| Conread position: | 932-1528 |
| Cow position: | chr22:12458358-12457759 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 372 |
| Conread position: | 933-1515 |
| Cow position: | chr22:12431741-12431156 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 372 |
| Conread position: | 934-1270 |
| Cow position: | chr22:12418775-12418434 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 189, 307 |
| Conread position: | 934-1515 |
| Cow position: | chr22:12431908-12431324 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 163 |
| Conread position: | 935-1515 |
| Cow position: | chr22:12498869-12499454 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 551 |
| Conread position: | 936-1523 |
| Cow position: | chr22:12475967-12475377 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 231 |
| Conread position: | 936-1523 |
| Cow position: | chr22:12499292-12499882 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 229 |
| Conread position: | 936-1525 |
| Cow position: | chr22:12458606-12458016 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 180 |
| Conread position: | 938-1521 |
| Cow position: | chr22:12399840-12399254 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 227 |
| Conread position: | 943-1476 |
| Cow position: | chr22:14442137-14442670 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 182, 418 |
| Conread position: | 943-1515 |
| Cow position: | chr22:11640615-11641190 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 944-1440 |
| Cow position: | chr22:12431142-12430643 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 177, 205 |
| Conread position: | 944-1444 |
| Cow position: | chr22:11666457-11666960 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 944-1515 |
| Cow position: | chr22:12431394-12430820 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 944-1523 |
| Cow position: | chr22:11640700-11641282 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 944-1529 |
| Cow position: | chr22:11701111-11701698 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 164 |
| Conread position: | 949-1474 |
| Cow position: | chr22:12419012-12418484 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 291 |
| Conread position: | 949-1523 |
| Cow position: | chr22:46654028-46654605 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 950-1442 |
| Cow position: | chr22:12418927-12418433 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 484 |
| Conread position: | 950-1474 |
| Cow position: | chr22:14467991-14468518 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 175, 445 |
| Conread position: | 950-1477 |
| Cow position: | chr22:12475869-12475339 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 282 |
| Conread position: | 950-1477 |
| Cow position: | chr22:14442060-14442590 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 224 |
| Conread position: | 950-1515 |
| Cow position: | chr22:12476373-12475805 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 536 |
| Conread position: | 955-1523 |
| Cow position: | chr22:12431299-12430728 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 366 |
| Conread position: | 959-1523 |
| Cow position: | chr22:12431799-12431232 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 194 |
| Conread position: | 959-1523 |
| Cow position: | chr22:14429839-14430406 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 360 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 166, 196 |
| Conread position: | 961-1527 |
| Cow position: | chr22:46653956-46654526 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 160, 362 |
| Conread position: | 982-1523 |
| Cow position: | chr22:12476425-12475881 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 139, 322 |
| Conread position: | 982-1523 |
| Cow position: | chr22:12498834-12499378 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 995-1523 |
| Cow position: | chr22:12419319-12418771 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1003-1523 |
| Cow position: | chr22:12458623-12458100 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1034-1505 |
| Cow position: | chr22:11666463-11666937 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 115 |
| Conread position: | 1034-1523 |
| Cow position: | chr22:12419011-12418519 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1043-1515 |
| Cow position: | chr22:12399897-12399428 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 292 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1111-1523 |
| Cow position: | chr22:11666456-11666871 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1119-1515 |
| Cow position: | chr22:12544601-12544997 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 206, 193 |
| Conread position: | 1124-1523 |
| Cow position: | chr22:12399897-12399504 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 57 |
| Conread position: | 1148-1523 |
| Cow position: | chr22:11640655-11641030 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 160, 148 |
| Conread position: | 1160-1523 |
| Cow position: | chr22:12498847-12499210 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 325, 303 |
| Conread position: | 1164-1523 |
| Cow position: | chr22:12458627-12458268 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 1175-1480 |
| Cow position: | chr22:14468051-14468356 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 1190-1391 |
| Cow position: | chr22:12545653-12545854 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 1193-1477 |
| Cow position: | chr22:12419017-12418733 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1193-1523 |
| Cow position: | chr22:14467985-14468315 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 108 |
| Conread position: | 1256-1525 |
| Cow position: | chr22:12432423-12432154 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.