Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 235-511 |
| Cow position: | chr23:24637117-24637386 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 235-512 |
| Cow position: | chr23:24538699-24538422 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-512 |
| Cow position: | chr23:24622909-24623186 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 260 |
| Conread position: | 235-512 |
| Cow position: | chr23:24648181-24648458 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-512 |
| Cow position: | chr23:25617607-25617884 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-512 |
| Cow position: | chr23:25691584-25691307 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 263 |
| Conread position: | 236-496 |
| Cow position: | chr23:24568090-24567830 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 244-512 |
| Cow position: | chr23:25658240-25658508 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 244-512 |
| Cow position: | chr23:25730697-25730429 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-510 |
| Cow position: | chr23:24630218-24630472 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 249-512 |
| Cow position: | chr23:25703107-25702844 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-483 |
| Cow position: | chr23:24527358-24527131 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 107 |
| Conread position: | 920-1345 |
| Cow position: | chr23:25724141-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 920-1513 |
| Cow position: | chr23:25698669-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 927-1512 |
| Cow position: | chr23:24536052-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 150 |
| Conread position: | 927-1515 |
| Cow position: | chr23:25660144-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 242 |
| Conread position: | 928-1524 |
| Cow position: | chr23:24639294-24639893 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 135 |
| Conread position: | 929-1523 |
| Cow position: | chr23:25626025-25626619 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 324 |
| Conread position: | 930-1376 |
| Cow position: | chr23:24639632-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 316 |
| Conread position: | 930-1445 |
| Cow position: | chr23:24639548-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 298 |
| Conread position: | 930-1523 |
| Cow position: | chr23:25626278-25626871 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 300 |
| Conread position: | 930-1524 |
| Cow position: | chr23:25626194-25626788 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 387 |
| Conread position: | 932-1290 |
| Cow position: | chr23:24626390-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 191, 296 |
| Conread position: | 932-1299 |
| Cow position: | chr23:25626697-25627069 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 189, 296 |
| Conread position: | 932-1433 |
| Cow position: | chr23:25660233-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 932-1441 |
| Cow position: | chr23:24535963-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 192, 296 |
| Conread position: | 932-1441 |
| Cow position: | chr23:24547164-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1505 |
| Cow position: | chr23:24547248-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 305 |
| Conread position: | 932-1523 |
| Cow position: | chr23:24560808-24560214 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 932-1523 |
| Cow position: | chr23:24639466-24640060 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 298 |
| Conread position: | 932-1525 |
| Cow position: | chr23:25626112-25626705 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 192, 307 |
| Conread position: | 933-1513 |
| Cow position: | chr23:24522569-24521971 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 188, 373 |
| Conread position: | 934-1525 |
| Cow position: | chr23:24560890-24560296 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 296 |
| Conread position: | 935-1523 |
| Cow position: | chr23:24639217-24639808 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 369 |
| Conread position: | 937-1440 |
| Cow position: | chr23:24560637-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 297 |
| Conread position: | 938-1272 |
| Cow position: | chr23:24654037-24654374 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 147, 170 |
| Conread position: | 940-1521 |
| Cow position: | chr23:24560716-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 950-1370 |
| Cow position: | chr23:24626324-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 172, 349 |
| Conread position: | 950-1477 |
| Cow position: | chr23:24522717-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 173, 107 |
| Conread position: | 950-1523 |
| Cow position: | chr23:24639400-24639976 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 293 |
| Conread position: | 955-1521 |
| Cow position: | chr23:25626471-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 956-1440 |
| Cow position: | chr23:25626556-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 31 |
| Conread position: | 957-1515 |
| Cow position: | chr23:24522794-24522236 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 186 |
| Conread position: | 957-1523 |
| Cow position: | chr23:24536106-24535537 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 959-1417 |
| Cow position: | chr23:24522624-24522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 165, 14 |
| Conread position: | 995-1525 |
| Cow position: | chr23:25660128-25660661 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 997-1514 |
| Cow position: | chr23:25698677-25698157 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 1002-1523 |
| Cow position: | chr23:24560904-24560382 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 1012-1454 |
| Cow position: | chr23:24626302-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 187 |
| Conread position: | 1019-1521 |
| Cow position: | chr23:24547329-24546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 1121-1523 |
| Cow position: | chr23:24522795-24522396 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 106 |
| Conread position: | 1122-1514 |
| Cow position: | chr23:24626331-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 1124-1448 |
| Cow position: | chr23:24654058-24654382 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 1124-1513 |
| Cow position: | chr23:25724102-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 1124-1521 |
| Cow position: | chr23:25698631-25698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 1124-1523 |
| Cow position: | chr23:24547305-24546906 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 1143-1523 |
| Cow position: | chr23:24626268-24626648 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 1193-1519 |
| Cow position: | chr23:24654043-24654369 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 1205-1523 |
| Cow position: | chr23:25724105-25723787 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 1267-1523 |
| Cow position: | chr23:24547330-24547074 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 1345-1525 |
| Cow position: | chr23:24626302-24626482 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.