Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 930-1445 |
| Cow position: | chr28:9253098-9253617 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 237 |
| Conread position: | 930-1445 |
| Cow position: | chr28:9290167-9290679 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 41 |
| Conread position: | 930-1514 |
| Cow position: | chr28:7757747-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 305 |
| Conread position: | 930-1515 |
| Cow position: | chr28:9253014-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 305 |
| Conread position: | 930-1521 |
| Cow position: | chr28:7758167-7758745 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 221 |
| Conread position: | 930-1521 |
| Cow position: | chr28:34695991-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 930-1523 |
| Cow position: | chr28:7757495-7758091 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 930-1523 |
| Cow position: | chr28:7758083-7758663 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 114 |
| Conread position: | 930-1523 |
| Cow position: | chr28:7810343-7810930 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 107, 114 |
| Conread position: | 930-1523 |
| Cow position: | chr28:9298729-9299308 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 357 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 931-1397 |
| Cow position: | chr28:7758404-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 193, 302 |
| Conread position: | 931-1505 |
| Cow position: | chr28:7757412-7757989 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 302 |
| Conread position: | 932-1187 |
| Cow position: | chr28:33210393-33210649 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 932-1523 |
| Cow position: | chr28:7757665-7758259 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 303 |
| Conread position: | 932-1523 |
| Cow position: | chr28:9298814-9299392 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 357 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 932-1523 |
| Cow position: | chr28:11334140-11333546 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 135 |
| Conread position: | 935-1312 |
| Cow position: | chr28:33210228-33210609 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 944-1432 |
| Cow position: | chr28:11333960-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 177, 279 |
| Conread position: | 944-1523 |
| Cow position: | chr28:34695921-34696503 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 290 |
| Conread position: | 946-1523 |
| Cow position: | chr28:34695839-34696419 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 226 |
| Conread position: | 949-1505 |
| Cow position: | chr28:7757346-7757905 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 284 |
| Conread position: | 950-1398 |
| Cow position: | chr28:34673454-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 956-1474 |
| Cow position: | chr28:34673376-34673897 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 97, 114 |
| Conread position: | 959-1523 |
| Cow position: | chr28:9298591-9299154 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 359 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 963-1523 |
| Cow position: | chr28:9252962-9253526 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 337 |
| Conread position: | 990-1523 |
| Cow position: | chr28:9290059-9290589 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 335 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 133, 149 |
| Conread position: | 998-1477 |
| Cow position: | chr28:9290151-9290627 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 1013-1523 |
| Cow position: | chr28:9298561-9299070 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 1015-1473 |
| Cow position: | chr28:9299217-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 356 |
| Conread position: | 1028-1474 |
| Cow position: | chr28:34673364-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 1089-1467 |
| Cow position: | chr28:7758394-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 1107-1483 |
| Cow position: | chr28:34673359-34673739 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 1122-1524 |
| Cow position: | chr28:34695850-34696252 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 1124-1521 |
| Cow position: | chr28:7810288-7810676 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 114, 103 |
| Conread position: | 1124-1523 |
| Cow position: | chr28:7757440-7757839 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 177 |
| Conread position: | 1127-1444 |
| Cow position: | chr28:33210340-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 1128-1513 |
| Cow position: | chr28:33210255-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 1152-1515 |
| Cow position: | chr28:7757384-7757747 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 1183-1491 |
| Cow position: | chr28:34673356-34673662 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1193-1523 |
| Cow position: | chr28:9299230-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 1264-1523 |
| Cow position: | chr28:33210223-33210483 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 212 |
| Conread position: | 1265-1523 |
| Cow position: | chr28:7757413-7757671 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 36 |
Show alignments to all cow chromosomes.