Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 244-489 |
| Cow position: | chr7:27245079-27244834 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 920-1473 |
| Cow position: | chr7:1439710-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 204, 51 |
| Conread position: | 929-1519 |
| Cow position: | chr7:18389988-18390582 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 95, 119 |
| Conread position: | 930-1223 |
| Cow position: | chr7:11600772-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 167, 174 |
| Conread position: | 930-1475 |
| Cow position: | chr7:18390241-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 303 |
| Conread position: | 930-1477 |
| Cow position: | chr7:8277675-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 146, 198 |
| Conread position: | 930-1505 |
| Cow position: | chr7:18390157-18390735 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 114 |
| Conread position: | 930-1523 |
| Cow position: | chr7:1439549-1440145 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 932-1225 |
| Cow position: | chr7:12293681-12293977 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 932-1366 |
| Cow position: | chr7:8278181-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 932-1399 |
| Cow position: | chr7:28846588-28847058 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 191, 397 |
| Conread position: | 932-1400 |
| Cow position: | chr7:18390327-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 298 |
| Conread position: | 932-1432 |
| Cow position: | chr7:8325654-8326160 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 932-1445 |
| Cow position: | chr7:1014936-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 295 |
| Conread position: | 932-1446 |
| Cow position: | chr7:8277845-8278362 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 932-1463 |
| Cow position: | chr7:1014354-1014882 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 932-1467 |
| Cow position: | chr7:11601106-11600568 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 328 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1480 |
| Cow position: | chr7:8243467-8244016 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 932-1481 |
| Cow position: | chr7:11601190-11600638 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 381 |
| Conread position: | 932-1481 |
| Cow position: | chr7:42878775-42878222 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 296 |
| Conread position: | 932-1491 |
| Cow position: | chr7:8277257-8277819 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 932-1506 |
| Cow position: | chr7:42878859-42878282 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 311 |
| Conread position: | 932-1521 |
| Cow position: | chr7:3180114-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 932-1521 |
| Cow position: | chr7:8325150-8325742 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 932-1522 |
| Cow position: | chr7:1014852-1015445 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 932-1523 |
| Cow position: | chr7:3179862-3180456 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 932-1523 |
| Cow position: | chr7:3180030-3180624 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 298 |
| Conread position: | 932-1523 |
| Cow position: | chr7:3180282-3180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 298 |
| Conread position: | 932-1523 |
| Cow position: | chr7:8325234-8325828 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 352 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 132, 157 |
| Conread position: | 932-1523 |
| Cow position: | chr7:8325402-8325996 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 193, 218 |
| Conread position: | 932-1523 |
| Cow position: | chr7:18390075-18390669 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 932-1523 |
| Cow position: | chr7:42879027-42878433 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 300 |
| Conread position: | 932-1526 |
| Cow position: | chr7:8277929-8278524 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 934-1474 |
| Cow position: | chr7:8325572-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 342 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 942-1523 |
| Cow position: | chr7:3179704-3180288 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 944-1523 |
| Cow position: | chr7:8277521-8278103 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 346 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 944-1523 |
| Cow position: | chr7:8324826-8325408 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 374 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 950-1523 |
| Cow position: | chr7:42879177-42878601 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 285 |
| Conread position: | 956-1522 |
| Cow position: | chr7:12293285-12293854 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 166, 274 |
| Conread position: | 959-1523 |
| Cow position: | chr7:42879252-42878685 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 515 |
| Conread position: | 1003-1523 |
| Cow position: | chr7:1014671-1015194 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 1042-1492 |
| Cow position: | chr7:28846446-28846899 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 1122-1525 |
| Cow position: | chr7:1014709-1015112 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 1124-1454 |
| Cow position: | chr7:1014297-1014627 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 1124-1528 |
| Cow position: | chr7:11434946-11434556 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 293, 101 |
| Conread position: | 1176-1523 |
| Cow position: | chr7:42879284-42878937 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 1194-1503 |
| Cow position: | chr7:1014283-1014592 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 1255-1500 |
| Cow position: | chr7:1014260-1014505 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 234, 227 |
| Conread position: | 1264-1474 |
| Cow position: | chr7:8277256-8277466 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 1281-1525 |
| Cow position: | chr7:3179710-3179954 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 210, 198 |
Show alignments to all cow chromosomes.