Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D040093.5 |
| Conread position: | 242-499 |
| Cow position: | chr8:55569522-55569779 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 199, 174 |
| Conread position: | 930-1384 |
| Cow position: | chr8:45201517-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 194, 432 |
| Conread position: | 930-1446 |
| Cow position: | chr8:48407299-48406780 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 129 |
| Conread position: | 930-1505 |
| Cow position: | chr8:46816796-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 305 |
| Conread position: | 930-1515 |
| Cow position: | chr8:45201349-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 374 |
| Conread position: | 930-1521 |
| Cow position: | chr8:48406963-48406369 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 99, 109 |
| Conread position: | 930-1523 |
| Cow position: | chr8:45201097-45201693 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 298 |
| Conread position: | 930-1523 |
| Cow position: | chr8:45201181-45201777 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 374 |
| Conread position: | 930-1523 |
| Cow position: | chr8:45201265-45201861 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 544 |
| Conread position: | 930-1523 |
| Cow position: | chr8:46816124-46816720 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 374 |
| Conread position: | 930-1523 |
| Cow position: | chr8:48407635-48407039 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 931-1523 |
| Cow position: | chr8:46816629-46817224 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 297 |
| Conread position: | 932-1505 |
| Cow position: | chr8:46816714-46817290 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 144 |
| Conread position: | 932-1515 |
| Cow position: | chr8:48407045-48406459 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 301 |
| Conread position: | 932-1515 |
| Cow position: | chr8:48407213-48406627 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 196 |
| Conread position: | 932-1517 |
| Cow position: | chr8:55580903-55581491 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 172 |
| Conread position: | 932-1521 |
| Cow position: | chr8:55581155-55581747 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 358 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 192, 295 |
| Conread position: | 932-1523 |
| Cow position: | chr8:55580987-55581581 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 550 |
| Conread position: | 932-1525 |
| Cow position: | chr8:46816378-46816974 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 303 |
| Conread position: | 932-1525 |
| Cow position: | chr8:48407129-48406533 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 932-1525 |
| Cow position: | chr8:48407549-48406953 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 303 |
| Conread position: | 932-1527 |
| Cow position: | chr8:55581071-55581669 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 305 |
| Conread position: | 949-1467 |
| Cow position: | chr8:46816059-46816580 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 175, 249 |
| Conread position: | 949-1515 |
| Cow position: | chr8:45201032-45201601 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 119 |
| Conread position: | 949-1521 |
| Cow position: | chr8:55580752-55581327 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 950-1515 |
| Cow position: | chr8:45200949-45201517 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 950-1515 |
| Cow position: | chr8:48407447-48406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 349 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 955-1525 |
| Cow position: | chr8:46815981-46816554 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 296 |
| Conread position: | 960-1523 |
| Cow position: | chr8:46815899-46816468 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 275 |
| Conread position: | 995-1525 |
| Cow position: | chr8:48407318-48406787 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 104, 110 |
| Conread position: | 1021-1523 |
| Cow position: | chr8:45200936-45201441 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 210 |
| Conread position: | 1043-1440 |
| Cow position: | chr8:48406682-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 1119-1523 |
| Cow position: | chr8:55580841-55581245 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 111 |
| Conread position: | 1124-1515 |
| Cow position: | chr8:6958056-6957666 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 1124-1525 |
| Cow position: | chr8:45200958-45201359 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 1185-1525 |
| Cow position: | chr8:6958079-6957740 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 1267-1525 |
| Cow position: | chr8:48407631-48407373 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 41 |
Show alignments to all cow chromosomes.