Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F030088.5 |
| Conread position: | 459-764 |
| Cow position: | chr11:56892628-56892941 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 472-803 |
| Cow position: | chr11:31894097-31894438 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 481-806 |
| Cow position: | chr11:45889786-45890129 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 482-803 |
| Cow position: | chr11:69402417-69402085 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 492-651 |
| Cow position: | chr11:65445006-65444839 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 492-793 |
| Cow position: | chr11:27681342-27681657 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 492-798 |
| Cow position: | chr11:19238315-19238006 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 492-804 |
| Cow position: | chr11:16000768-16001093 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 492-805 |
| Cow position: | chr11:8828786-8828463 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 495-673 |
| Cow position: | chr11:7333878-7333695 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 495-745 |
| Cow position: | chr11:38009966-38009718 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-767 |
| Cow position: | chr11:12950102-12949823 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-768 |
| Cow position: | chr11:50951398-50951682 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-785 |
| Cow position: | chr11:53452504-53452204 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-801 |
| Cow position: | chr11:11460335-11460636 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-803 |
| Cow position: | chr11:24967301-24967605 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 495-803 |
| Cow position: | chr11:38845412-38845106 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 495-803 |
| Cow position: | chr11:75255280-75255566 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 495-805 |
| Cow position: | chr11:55821862-55821551 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 495-807 |
| Cow position: | chr11:65988073-65988391 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 496-801 |
| Cow position: | chr11:19269229-19268927 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 496-803 |
| Cow position: | chr11:20491416-20491730 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 496-803 |
| Cow position: | chr11:67236256-67236561 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-803 |
| Cow position: | chr11:78543780-78544096 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-810 |
| Cow position: | chr11:42519586-42519905 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 497-766 |
| Cow position: | chr11:7683819-7684082 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 498-803 |
| Cow position: | chr11:67745172-67745477 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 500-810 |
| Cow position: | chr11:32071998-32072316 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 507-802 |
| Cow position: | chr11:43644245-43643924 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 508-801 |
| Cow position: | chr11:48982983-48983279 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 510-806 |
| Cow position: | chr11:51745214-51745512 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 515-692 |
| Cow position: | chr11:31575861-31576054 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 516-803 |
| Cow position: | chr11:81518303-81518014 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 136, 184 |
| Conread position: | 517-806 |
| Cow position: | chr11:66401569-66401853 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 525-803 |
| Cow position: | chr11:52832842-52832560 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 527-744 |
| Cow position: | chr11:21473243-21473020 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 540-765 |
| Cow position: | chr11:60137591-60137814 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 555-802 |
| Cow position: | chr11:17151584-17151836 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 145 |
| Conread position: | 579-763 |
| Cow position: | chr11:72082641-72082826 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 616-803 |
| Cow position: | chr11:34642260-34642070 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 651-802 |
| Cow position: | chr11:373131-372979 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 45 |
Show alignments to all cow chromosomes.