Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F030088.5 |
| Conread position: | 482-794 |
| Cow position: | chr13:29630991-29630685 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 482-803 |
| Cow position: | chr13:34995193-34995528 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 492-762 |
| Cow position: | chr13:35719015-35719291 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 492-803 |
| Cow position: | chr13:12745797-12745474 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 492-803 |
| Cow position: | chr13:47188571-47188245 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 261 |
| Conread position: | 495-652 |
| Cow position: | chr13:34191319-34191479 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-752 |
| Cow position: | chr13:38898128-38898383 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 495-769 |
| Cow position: | chr13:11834351-11834638 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 216 |
| Conread position: | 495-769 |
| Cow position: | chr13:26508587-26508323 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 495-790 |
| Cow position: | chr13:17346928-17346626 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 495-794 |
| Cow position: | chr13:6759670-6759975 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-802 |
| Cow position: | chr13:9125793-9125474 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 49, 144 |
| Conread position: | 495-802 |
| Cow position: | chr13:34761798-34761487 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 495-803 |
| Cow position: | chr13:661514-661835 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-803 |
| Cow position: | chr13:4208695-4209021 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-803 |
| Cow position: | chr13:7010588-7010277 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 495-803 |
| Cow position: | chr13:20180540-20180217 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 495-804 |
| Cow position: | chr13:9803194-9802869 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 46, 210 |
| Conread position: | 495-804 |
| Cow position: | chr13:30510178-30509867 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 495-804 |
| Cow position: | chr13:37558402-37558084 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-805 |
| Cow position: | chr13:25434997-25435324 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 495-806 |
| Cow position: | chr13:8245213-8245533 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 495-806 |
| Cow position: | chr13:46430178-46430496 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 213 |
| Conread position: | 495-807 |
| Cow position: | chr13:15945601-15945275 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 496-775 |
| Cow position: | chr13:46284494-46284775 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-780 |
| Cow position: | chr13:14220595-14220324 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-794 |
| Cow position: | chr13:1959129-1958818 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 496-803 |
| Cow position: | chr13:22886872-22887188 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 500-744 |
| Cow position: | chr13:54080695-54080950 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 210 |
| Conread position: | 503-733 |
| Cow position: | chr13:18350954-18350711 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 503-803 |
| Cow position: | chr13:16327773-16327476 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 504-734 |
| Cow position: | chr13:35653977-35654216 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 504-803 |
| Cow position: | chr13:22075787-22075472 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 510-804 |
| Cow position: | chr13:49200737-49200440 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 515-768 |
| Cow position: | chr13:32167212-32167470 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 526-806 |
| Cow position: | chr13:18551089-18550805 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 538-772 |
| Cow position: | chr13:54969726-54969968 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 198 |
| Conread position: | 541-754 |
| Cow position: | chr13:33954955-33955171 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 541-756 |
| Cow position: | chr13:54471086-54470869 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 558-806 |
| Cow position: | chr13:34665185-34664929 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 126 |
| Conread position: | 562-769 |
| Cow position: | chr13:58348130-58347925 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 562-804 |
| Cow position: | chr13:18761682-18761928 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 137 |
| Conread position: | 564-801 |
| Cow position: | chr13:30271372-30271127 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 140 |
| Conread position: | 574-794 |
| Cow position: | chr13:33347165-33346949 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 591-802 |
| Cow position: | chr13:20156507-20156289 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 53 |
Show alignments to all cow chromosomes.