Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F030088.5 |
| Conread position: | 1-769 |
| Cow position: | chr6:59588994-59588223 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 487-803 |
| Cow position: | chr6:31425663-31425336 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 490-801 |
| Cow position: | chr6:24223263-24222937 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 492-798 |
| Cow position: | chr6:38453883-38453563 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 217 |
| Conread position: | 492-803 |
| Cow position: | chr6:37612025-37612329 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 495-692 |
| Cow position: | chr6:35415618-35415402 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 495-692 |
| Cow position: | chr6:47204377-47204589 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-715 |
| Cow position: | chr6:61218128-61217898 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-754 |
| Cow position: | chr6:47327164-47326909 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-766 |
| Cow position: | chr6:44372042-44371758 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-775 |
| Cow position: | chr6:54144207-54144495 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-779 |
| Cow position: | chr6:7824666-7824940 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-789 |
| Cow position: | chr6:3545597-3545887 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 495-789 |
| Cow position: | chr6:65871803-65872096 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 495-794 |
| Cow position: | chr6:22968983-22969271 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 495-801 |
| Cow position: | chr6:4164267-4163949 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 495-801 |
| Cow position: | chr6:56376450-56376131 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-802 |
| Cow position: | chr6:827805-827485 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-802 |
| Cow position: | chr6:24583328-24583012 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 495-808 |
| Cow position: | chr6:8318262-8317940 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 496-767 |
| Cow position: | chr6:18582907-18582632 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 496-767 |
| Cow position: | chr6:29412857-29412605 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-768 |
| Cow position: | chr6:1907447-1907704 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 496-785 |
| Cow position: | chr6:52002271-52002554 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 160, 27 |
| Conread position: | 496-792 |
| Cow position: | chr6:34549314-34549607 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 166, 26 |
| Conread position: | 496-801 |
| Cow position: | chr6:53673762-53674082 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 496-803 |
| Cow position: | chr6:6995047-6994735 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-803 |
| Cow position: | chr6:19427356-19427669 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 496-803 |
| Cow position: | chr6:56860452-56860762 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 497-801 |
| Cow position: | chr6:24623069-24622757 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 503-803 |
| Cow position: | chr6:6367761-6367450 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 118 |
| Conread position: | 507-803 |
| Cow position: | chr6:36194505-36194816 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 514-803 |
| Cow position: | chr6:15997289-15996997 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 515-797 |
| Cow position: | chr6:24557802-24558095 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 560-767 |
| Cow position: | chr6:32798900-32798689 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 564-775 |
| Cow position: | chr6:47858265-47858476 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 88, 137 |
| Conread position: | 579-789 |
| Cow position: | chr6:1890586-1890371 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 9, 22 |
Show alignments to all cow chromosomes.