Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F030088.5 |
| Conread position: | 460-801 |
| Cow position: | chr9:39152478-39152832 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 483-781 |
| Cow position: | chr9:41957983-41957680 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 483-804 |
| Cow position: | chr9:20038965-20039285 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 492-752 |
| Cow position: | chr9:2113838-2114106 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 495-652 |
| Cow position: | chr9:214301-214454 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 495-692 |
| Cow position: | chr9:11364058-11363851 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 495-694 |
| Cow position: | chr9:52787370-52787585 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-712 |
| Cow position: | chr9:56253064-56252841 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 495-741 |
| Cow position: | chr9:5071438-5071689 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 495-767 |
| Cow position: | chr9:58669544-58669267 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 495-769 |
| Cow position: | chr9:11102648-11102916 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 495-769 |
| Cow position: | chr9:20897068-20896784 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-769 |
| Cow position: | chr9:38546581-38546302 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-770 |
| Cow position: | chr9:34310197-34309911 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-771 |
| Cow position: | chr9:15950992-15951278 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-779 |
| Cow position: | chr9:32816967-32817269 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 495-789 |
| Cow position: | chr9:47926076-47925788 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 495-792 |
| Cow position: | chr9:15006588-15006890 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 495-798 |
| Cow position: | chr9:46252977-46252674 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-801 |
| Cow position: | chr9:39428633-39428952 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 495-801 |
| Cow position: | chr9:48773510-48773204 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 495-803 |
| Cow position: | chr9:19382491-19382177 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-803 |
| Cow position: | chr9:20839782-20839476 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-807 |
| Cow position: | chr9:42173025-42173343 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 150 |
| Conread position: | 496-768 |
| Cow position: | chr9:32848057-32847774 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 496-769 |
| Cow position: | chr9:48133895-48133617 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 496-769 |
| Cow position: | chr9:59924709-59924435 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 496-802 |
| Cow position: | chr9:56861180-56860863 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 497-803 |
| Cow position: | chr9:35708457-35708768 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 500-802 |
| Cow position: | chr9:18110703-18111014 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 500-803 |
| Cow position: | chr9:43037640-43037328 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 503-798 |
| Cow position: | chr9:24837689-24837392 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 142, 70 |
| Conread position: | 506-715 |
| Cow position: | chr9:52633339-52633553 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 510-803 |
| Cow position: | chr9:34204282-34203975 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 512-801 |
| Cow position: | chr9:5172483-5172181 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 516-803 |
| Cow position: | chr9:58698967-58699282 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 533-806 |
| Cow position: | chr9:6203665-6203942 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 537-769 |
| Cow position: | chr9:14184787-14184554 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 21, 168 |
| Conread position: | 539-792 |
| Cow position: | chr9:15034026-15033766 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 541-757 |
| Cow position: | chr9:21462748-21462970 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 541-801 |
| Cow position: | chr9:33059163-33059425 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 544-812 |
| Cow position: | chr9:49651839-49651568 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 548-768 |
| Cow position: | chr9:16118838-16118613 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 563-807 |
| Cow position: | chr9:17110864-17110614 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 568-805 |
| Cow position: | chr9:40007946-40007707 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 80, 31 |
Show alignments to all cow chromosomes.