Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F030088.5 |
| Conread position: | 467-800 |
| Cow position: | chrX:18142596-18142252 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 481-802 |
| Cow position: | chrX:21664849-21664515 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 481-803 |
| Cow position: | chrX:6041338-6041003 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 482-813 |
| Cow position: | chrX:25713672-25714016 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 492-790 |
| Cow position: | chrX:41560358-41560078 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 494-806 |
| Cow position: | chrX:40789096-40789417 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 495-690 |
| Cow position: | chrX:39546084-39545880 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 495-692 |
| Cow position: | chrX:9161474-9161676 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 495-721 |
| Cow position: | chrX:40642875-40643103 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-742 |
| Cow position: | chrX:11562045-11562292 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 495-750 |
| Cow position: | chrX:32743423-32743686 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-767 |
| Cow position: | chrX:630417-630139 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-769 |
| Cow position: | chrX:5047014-5046744 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 495-779 |
| Cow position: | chrX:11746733-11747011 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 495-794 |
| Cow position: | chrX:25338072-25338386 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-798 |
| Cow position: | chrX:7497132-7497439 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 495-801 |
| Cow position: | chrX:36840765-36841069 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-802 |
| Cow position: | chrX:26940607-26940314 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 495-802 |
| Cow position: | chrX:38999735-39000058 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 495-803 |
| Cow position: | chrX:33803120-33802797 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 215 |
| Conread position: | 495-804 |
| Cow position: | chrX:6563409-6563729 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 495-804 |
| Cow position: | chrX:18456285-18456612 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 30, 216 |
| Conread position: | 495-806 |
| Cow position: | chrX:16514374-16514061 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 496-647 |
| Cow position: | chrX:24747502-24747350 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 496-766 |
| Cow position: | chrX:2300817-2301094 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 124 |
| Conread position: | 496-787 |
| Cow position: | chrX:25419268-25418963 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 496-805 |
| Cow position: | chrX:20791928-20791607 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 497-757 |
| Cow position: | chrX:1978406-1978668 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 497-802 |
| Cow position: | chrX:23414470-23414166 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 497-802 |
| Cow position: | chrX:27287843-27287529 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 500-769 |
| Cow position: | chrX:6656280-6656555 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 513-803 |
| Cow position: | chrX:6632990-6633276 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 514-712 |
| Cow position: | chrX:7344993-7345199 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 516-769 |
| Cow position: | chrX:47743998-47744260 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 191 |
| Conread position: | 520-803 |
| Cow position: | chrX:9839140-9839432 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 520-804 |
| Cow position: | chrX:9539236-9539531 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 626-807 |
| Cow position: | chrX:34470743-34470925 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 654-810 |
| Cow position: | chrX:488739-488893 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 42 |
Show alignments to all cow chromosomes.