Cow genome map

Conread name: Ss1.1-LyN1-MLN01G090089.5

Conread position: 68-340
Cow position: chr27:3233301-3233020 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 148

Conread position: 68-340
Cow position: chr27:4981601-4981881 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 174

Conread position: 647-801
Cow position: chr27:21204166-21204010 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 28

Conread position: 649-832
Cow position: chr27:16427705-16427893 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 651-809
Cow position: chr27:1536223-1536377 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 154, 17

Conread position: 651-815
Cow position: chr27:20001460-20001629 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 0

Conread position: 651-830
Cow position: chr27:27666050-27666234 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 138

Conread position: 652-755
Cow position: chr27:15925874-15925767 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 652-773
Cow position: chr27:12281743-12281867 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 15

Conread position: 652-777
Cow position: chr27:3866212-3866341 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 652-787
Cow position: chr27:21284186-21284050 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 0

Conread position: 652-794
Cow position: chr27:6030812-6030959 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 31

Conread position: 652-794
Cow position: chr27:12277156-12277301 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 113

Conread position: 652-794
Cow position: chr27:27278769-27278902 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 652-796
Cow position: chr27:344878-344730 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 652-798
Cow position: chr27:8426902-8427052 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 652-801
Cow position: chr27:8429047-8429201 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 652-802
Cow position: chr27:5925318-5925472 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 652-802
Cow position: chr27:11480976-11481130 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 652-802
Cow position: chr27:26784867-26785021 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 652-803
Cow position: chr27:4768480-4768635 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 652-803
Cow position: chr27:8290887-8291043 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 80, 43

Conread position: 652-803
Cow position: chr27:13353351-13353506 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 652-803
Cow position: chr27:30307223-30307069 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 652-809
Cow position: chr27:8959984-8959824 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 151

Conread position: 652-812
Cow position: chr27:4982417-4982582 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 652-812
Cow position: chr27:11434221-11434385 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 45

Conread position: 652-813
Cow position: chr27:2557946-2557780 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:526053-525886 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 76, 32

Conread position: 652-815
Cow position: chr27:1188711-1188879 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:1520725-1520893 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:2000890-2001058 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 133

Conread position: 652-815
Cow position: chr27:3232489-3232321 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:3990755-3990587 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 73, 137

Conread position: 652-815
Cow position: chr27:4828544-4828713 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 652-815
Cow position: chr27:5990999-5990833 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 94

Conread position: 652-815
Cow position: chr27:8972489-8972657 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:9990152-9989990 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 119

Conread position: 652-815
Cow position: chr27:10578992-10579160 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:12006193-12006361 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:13308689-13308857 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:14297252-14297420 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 652-815
Cow position: chr27:15273023-15272855 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:15544060-15544228 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:16031352-16031184 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:17568147-17568314 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 75, 53

Conread position: 652-815
Cow position: chr27:19424333-19424164 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 652-815
Cow position: chr27:19488049-19488217 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:19932521-19932353 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 140
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:20810466-20810634 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 141
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 652-815
Cow position: chr27:22797612-22797444 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:25801160-25800992 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 0

Conread position: 652-815
Cow position: chr27:26329978-26330145 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 72, 0

Conread position: 652-815
Cow position: chr27:27045228-27045390 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 153, 77

Conread position: 652-815
Cow position: chr27:27291434-27291602 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:27849315-27849483 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 652-815
Cow position: chr27:29036324-29036167 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 153, 56

Conread position: 652-820
Cow position: chr27:21451490-21451662 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 73, 93

Conread position: 652-821
Cow position: chr27:27193320-27193146 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 652-822
Cow position: chr27:4331695-4331520 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 652-832
Cow position: chr27:31268264-31268444 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 15

Conread position: 652-836
Cow position: chr27:5913979-5914167 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 73, 34

Conread position: 652-842
Cow position: chr27:165874-165679 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 652-842
Cow position: chr27:25799302-25799497 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 73, 9

Conread position: 652-842
Cow position: chr27:25971556-25971361 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 73, 91

Conread position: 652-842
Cow position: chr27:27556851-27557042 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 159

Conread position: 652-842
Cow position: chr27:27729443-27729247 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 652-846
Cow position: chr27:31249287-31249486 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 652-961
Cow position: chr27:13183218-13182890 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 262

Conread position: 652-962
Cow position: chr27:29811375-29811700 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 32

Conread position: 652-969
Cow position: chr27:27235061-27234735 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 74, 63

Conread position: 653-815
Cow position: chr27:15634296-15634129 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 75, 0

Conread position: 653-815
Cow position: chr27:24296223-24296056 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 72, 0

Conread position: 654-815
Cow position: chr27:1082115-1081949 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 654-815
Cow position: chr27:3653653-3653487 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 654-815
Cow position: chr27:3759918-3760081 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 654-815
Cow position: chr27:5983983-5983817 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 654-815
Cow position: chr27:8200986-8201151 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 20

Conread position: 654-815
Cow position: chr27:19523662-19523495 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 0

Conread position: 654-822
Cow position: chr27:15872272-15872101 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 157

Conread position: 655-837
Cow position: chr27:12750073-12750261 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 658-794
Cow position: chr27:21342579-21342719 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 661-815
Cow position: chr27:27930261-27930421 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 661-842
Cow position: chr27:24260725-24260540 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 43

Conread position: 670-812
Cow position: chr27:15348725-15348872 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 680-843
Cow position: chr27:27501283-27501449 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 78

Conread position: 685-815
Cow position: chr27:15033813-15033678 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 687-815
Cow position: chr27:24562581-24562454 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 118, 41

Conread position: 690-815
Cow position: chr27:20716716-20716586 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 691-815
Cow position: chr27:28042636-28042507 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 810-972
Cow position: chr27:16332243-16332073 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 92

Show alignments to all cow chromosomes.