Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-258 |
| Cow position: | chr10:6261820-6261567 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 159, 41 |
| Conread position: | 5-633 |
| Cow position: | chr10:53363446-53364068 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 41 |
| Conread position: | 5-690 |
| Cow position: | chr10:21075820-21076537 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 6-313 |
| Cow position: | chr10:39881826-39881517 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 19-313 |
| Cow position: | chr10:24978692-24978379 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 57-248 |
| Cow position: | chr10:24314315-24314128 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 109-553 |
| Cow position: | chr10:20396338-20396786 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 135 |
| Conread position: | 318-541 |
| Cow position: | chr10:64303183-64302949 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 319-659 |
| Cow position: | chr10:39881481-39881117 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 134, 7 |
| Conread position: | 319-683 |
| Cow position: | chr10:24314036-24313669 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 319-714 |
| Cow position: | chr10:24978341-24977944 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 327-712 |
| Cow position: | chr10:7282888-7282489 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 210 |
| Conread position: | 332-664 |
| Cow position: | chr10:60489466-60489801 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 127, 73 |
| Conread position: | 332-684 |
| Cow position: | chr10:14859777-14860134 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 168 |
| Conread position: | 332-684 |
| Cow position: | chr10:29696041-29696403 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-684 |
| Cow position: | chr10:62216406-62216773 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 71, 89 |
| Conread position: | 332-696 |
| Cow position: | chr10:24299052-24298674 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 332-699 |
| Cow position: | chr10:25498155-25498534 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 332-699 |
| Cow position: | chr10:34685695-34686075 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 77, 164 |
| Conread position: | 332-699 |
| Cow position: | chr10:62778143-62778529 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 333-633 |
| Cow position: | chr10:29846809-29846493 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-658 |
| Cow position: | chr10:19839953-19840294 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-669 |
| Cow position: | chr10:41566911-41567259 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-681 |
| Cow position: | chr10:41157252-41157612 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 333-684 |
| Cow position: | chr10:1375337-1375698 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 235 |
| Conread position: | 333-684 |
| Cow position: | chr10:22101042-22101399 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 80, 123 |
| Conread position: | 333-684 |
| Cow position: | chr10:25359200-25359566 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-684 |
| Cow position: | chr10:32650533-32650900 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr10:37769623-37769988 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-684 |
| Cow position: | chr10:38538693-38538330 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 118, 76 |
| Conread position: | 333-684 |
| Cow position: | chr10:62409051-62408690 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 64, 158 |
| Conread position: | 333-696 |
| Cow position: | chr10:21740948-21740571 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 333-699 |
| Cow position: | chr10:11685863-11685489 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 333-699 |
| Cow position: | chr10:14803635-14804018 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 248 |
| Conread position: | 333-699 |
| Cow position: | chr10:21400871-21400489 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr10:32578104-32578471 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-699 |
| Cow position: | chr10:39179584-39179965 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 333-699 |
| Cow position: | chr10:39817549-39817181 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 206 |
| Conread position: | 333-699 |
| Cow position: | chr10:51952801-51952436 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 333-699 |
| Cow position: | chr10:54059550-54059174 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 333-699 |
| Cow position: | chr10:57559750-57559365 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 333-703 |
| Cow position: | chr10:124110-124496 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-703 |
| Cow position: | chr10:19511408-19511792 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 333-703 |
| Cow position: | chr10:21486717-21487101 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 78, 205 |
| Conread position: | 333-703 |
| Cow position: | chr10:39041504-39041116 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 63, 254 |
| Conread position: | 333-703 |
| Cow position: | chr10:41876719-41877105 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 195 |
| Conread position: | 334-706 |
| Cow position: | chr10:276395-276778 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 336-695 |
| Cow position: | chr10:58860869-58860503 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 339-684 |
| Cow position: | chr10:38345556-38345195 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 65, 201 |
| Conread position: | 342-526 |
| Cow position: | chr10:6260954-6260759 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 361-684 |
| Cow position: | chr10:2421969-2421641 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 361-684 |
| Cow position: | chr10:28116594-28116268 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 363-630 |
| Cow position: | chr10:44294672-44294956 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 199 |
| Conread position: | 369-689 |
| Cow position: | chr10:184102-184441 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 374-682 |
| Cow position: | chr10:14928490-14928794 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 375-684 |
| Cow position: | chr10:38847216-38847525 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 377-703 |
| Cow position: | chr10:41351909-41351574 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 193 |
| Conread position: | 378-663 |
| Cow position: | chr10:42109580-42109868 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 385-703 |
| Cow position: | chr10:15862279-15861951 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 418-699 |
| Cow position: | chr10:39854127-39853832 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 420-700 |
| Cow position: | chr10:4499580-4499865 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 146 |
| Conread position: | 433-684 |
| Cow position: | chr10:16925437-16925703 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 450-684 |
| Cow position: | chr10:2123331-2123095 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 472-708 |
| Cow position: | chr10:46694424-46694186 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 117, 150 |
| Conread position: | 478-684 |
| Cow position: | chr10:58377632-58377422 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 487-682 |
| Cow position: | chr10:49310471-49310668 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 490-714 |
| Cow position: | chr10:11820301-11820529 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 520-699 |
| Cow position: | chr10:55093241-55093423 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 31 |
Show alignments to all cow chromosomes.