Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-257 |
| Cow position: | chr11:13068740-13068497 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 163, 41 |
| Conread position: | 5-257 |
| Cow position: | chr11:13161257-13161500 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 163, 39 |
| Conread position: | 5-333 |
| Cow position: | chr11:38006235-38005906 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 5-461 |
| Cow position: | chr11:9416551-9416122 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 6-452 |
| Cow position: | chr11:30186188-30186651 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 7-288 |
| Cow position: | chr11:10218465-10218185 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 37 |
| Conread position: | 51-258 |
| Cow position: | chr11:44230243-44230457 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 58-333 |
| Cow position: | chr11:36761232-36761507 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 165 |
| Conread position: | 91-699 |
| Cow position: | chr11:44895821-44895200 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 319-683 |
| Cow position: | chr11:36761521-36761892 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 320-701 |
| Cow position: | chr11:10218128-10217745 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 320-714 |
| Cow position: | chr11:44230559-44230950 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 322-699 |
| Cow position: | chr11:75919849-75920233 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 90 |
| Conread position: | 326-698 |
| Cow position: | chr11:30304681-30305050 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 125, 79 |
| Conread position: | 330-684 |
| Cow position: | chr11:4271430-4271066 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 331-682 |
| Cow position: | chr11:7113038-7113398 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 332-683 |
| Cow position: | chr11:21466514-21466881 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 332-684 |
| Cow position: | chr11:9659956-9659593 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 332-688 |
| Cow position: | chr11:28050344-28049990 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 115, 73 |
| Conread position: | 332-697 |
| Cow position: | chr11:44861087-44860711 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 332-699 |
| Cow position: | chr11:8887712-8887336 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-699 |
| Cow position: | chr11:12351625-12351245 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 93 |
| Conread position: | 332-699 |
| Cow position: | chr11:15998336-15998713 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 332-699 |
| Cow position: | chr11:28063128-28063501 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 332-699 |
| Cow position: | chr11:29234207-29233837 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 332-699 |
| Cow position: | chr11:33044679-33044301 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 126, 65 |
| Conread position: | 333-659 |
| Cow position: | chr11:4028111-4027774 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 143 |
| Conread position: | 333-659 |
| Cow position: | chr11:37492203-37491869 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 333-665 |
| Cow position: | chr11:38835978-38835629 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 333-682 |
| Cow position: | chr11:11987559-11987911 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 333-683 |
| Cow position: | chr11:28055155-28054796 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 205 |
| Conread position: | 333-683 |
| Cow position: | chr11:44157794-44157433 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 333-683 |
| Cow position: | chr11:58133811-58134174 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 115, 62 |
| Conread position: | 333-684 |
| Cow position: | chr11:10846883-10847250 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:19103047-19102681 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 333-684 |
| Cow position: | chr11:23876743-23877108 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:24392765-24393122 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 333-684 |
| Cow position: | chr11:26125489-26125126 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 333-684 |
| Cow position: | chr11:28230310-28229948 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 279 |
| Conread position: | 333-684 |
| Cow position: | chr11:29669190-29668823 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:37093623-37093256 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 162 |
| Conread position: | 333-684 |
| Cow position: | chr11:41171254-41170887 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:43515192-43514825 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 77, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:53288016-53287650 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 165 |
| Conread position: | 333-684 |
| Cow position: | chr11:71329083-71329449 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-684 |
| Cow position: | chr11:72110522-72110160 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr11:85394370-85394006 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 71, 163 |
| Conread position: | 333-696 |
| Cow position: | chr11:37477677-37477300 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-699 |
| Cow position: | chr11:1496628-1496254 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 10 |
| Conread position: | 333-699 |
| Cow position: | chr11:8262257-8261883 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 333-699 |
| Cow position: | chr11:9157982-9157606 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 130, 63 |
| Conread position: | 333-699 |
| Cow position: | chr11:17108247-17107866 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 333-699 |
| Cow position: | chr11:52418830-52419208 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 333-699 |
| Cow position: | chr11:57628608-57628226 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr11:77729087-77728707 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 78, 205 |
| Conread position: | 333-703 |
| Cow position: | chr11:19064811-19064425 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 230 |
| Conread position: | 333-703 |
| Cow position: | chr11:32450306-32450691 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-708 |
| Cow position: | chr11:15983069-15983452 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 333-714 |
| Cow position: | chr11:3492451-3492844 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-716 |
| Cow position: | chr11:4041622-4041233 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 334-699 |
| Cow position: | chr11:34020348-34020708 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 62 |
| Conread position: | 342-682 |
| Cow position: | chr11:67449945-67450302 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 187 |
| Conread position: | 361-684 |
| Cow position: | chr11:39833221-39833554 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 361-684 |
| Cow position: | chr11:50029228-50028896 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 362-653 |
| Cow position: | chr11:32071582-32071877 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 211 |
| Conread position: | 362-696 |
| Cow position: | chr11:14730052-14729708 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 43, 230 |
| Conread position: | 379-712 |
| Cow position: | chr11:65162051-65161729 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 385-688 |
| Cow position: | chr11:45110851-45111170 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 392-678 |
| Cow position: | chr11:8244206-8244506 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 103 |
| Conread position: | 392-684 |
| Cow position: | chr11:25527072-25527365 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 400-684 |
| Cow position: | chr11:8282586-8282881 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 418-705 |
| Cow position: | chr11:10049650-10049948 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 419-682 |
| Cow position: | chr11:17924916-17924639 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 146 |
| Conread position: | 420-713 |
| Cow position: | chr11:24243001-24243288 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 424-714 |
| Cow position: | chr11:13067479-13067189 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 424-714 |
| Cow position: | chr11:13162525-13162815 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 466-701 |
| Cow position: | chr11:30186883-30187118 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 472-699 |
| Cow position: | chr11:37065534-37065301 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 132, 113 |
| Conread position: | 474-663 |
| Cow position: | chr11:9415814-9415629 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 82 |
| Conread position: | 494-684 |
| Cow position: | chr11:32684900-32685088 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 101, 64 |
Show alignments to all cow chromosomes.