Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 4-292 |
| Cow position: | chr13:30261408-30261688 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 5-289 |
| Cow position: | chr13:21130446-21130728 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 5-289 |
| Cow position: | chr13:22186563-22186280 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 19-462 |
| Cow position: | chr13:34047815-34048252 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 30 |
| Conread position: | 327-658 |
| Cow position: | chr13:2232158-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 327-697 |
| Cow position: | chr13:22186218-22185849 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 332-684 |
| Cow position: | chr13:3276661-3277025 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 68, 265 |
| Conread position: | 332-684 |
| Cow position: | chr13:31832112-31832471 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 332-684 |
| Cow position: | chr13:33928055-33927699 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 332-684 |
| Cow position: | chr13:34692667-34693034 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 332-699 |
| Cow position: | chr13:2908940-2908564 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 332-699 |
| Cow position: | chr13:33825224-33824845 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 332-699 |
| Cow position: | chr13:34143153-34142773 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 332-703 |
| Cow position: | chr13:34187184-34186795 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-707 |
| Cow position: | chr13:34936642-34937040 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 249 |
| Conread position: | 332-735 |
| Cow position: | chr13:30657457-30657050 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 333-683 |
| Cow position: | chr13:31612831-31612465 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr13:1593650-1593284 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 208 |
| Conread position: | 333-684 |
| Cow position: | chr13:4940591-4940959 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr13:6668619-6668252 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 65, 230 |
| Conread position: | 333-684 |
| Cow position: | chr13:9044015-9044372 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 78, 165 |
| Conread position: | 333-684 |
| Cow position: | chr13:15924878-15924513 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 163 |
| Conread position: | 333-684 |
| Cow position: | chr13:33336818-33336471 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 333-684 |
| Cow position: | chr13:34042860-34042498 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr13:34911861-34911507 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 333-688 |
| Cow position: | chr13:32986542-32986182 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 333-696 |
| Cow position: | chr13:35756745-35757126 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 207 |
| Conread position: | 333-699 |
| Cow position: | chr13:13324262-13324635 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 333-699 |
| Cow position: | chr13:17307985-17308361 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 333-699 |
| Cow position: | chr13:21840690-21840308 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr13:30245229-30244847 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr13:62328077-62327698 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 64, 163 |
| Conread position: | 333-703 |
| Cow position: | chr13:50108971-50109352 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 112, 62 |
| Conread position: | 333-705 |
| Cow position: | chr13:15521009-15520621 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 165 |
| Conread position: | 333-716 |
| Cow position: | chr13:31734576-31734176 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-733 |
| Cow position: | chr13:3654806-3654394 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 334-709 |
| Cow position: | chr13:21130835-21131215 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 342-699 |
| Cow position: | chr13:2297285-2296912 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 221 |
| Conread position: | 371-707 |
| Cow position: | chr13:30140536-30140888 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 375-681 |
| Cow position: | chr13:56730732-56730417 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 375-684 |
| Cow position: | chr13:30302615-30302935 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 162 |
| Conread position: | 377-696 |
| Cow position: | chr13:31560741-31561073 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 391-682 |
| Cow position: | chr13:2583737-2583437 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 182 |
| Conread position: | 485-682 |
| Cow position: | chr13:3567450-3567652 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.