Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-261 |
| Cow position: | chr14:30707651-30707398 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 5-713 |
| Cow position: | chr14:48406633-48405914 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 33 |
| Conread position: | 8-334 |
| Cow position: | chr14:39723129-39722802 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 174, 17 |
| Conread position: | 332-676 |
| Cow position: | chr14:43552800-43553161 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 296 |
| Conread position: | 332-681 |
| Cow position: | chr14:23690844-23690484 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 332-690 |
| Cow position: | chr14:14309684-14309324 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 332-699 |
| Cow position: | chr14:42151704-42152085 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 332-699 |
| Cow position: | chr14:44421938-44422316 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 332-699 |
| Cow position: | chr14:44856045-44855664 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 332-708 |
| Cow position: | chr14:44130307-44130685 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 332-712 |
| Cow position: | chr14:47623949-47624338 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 332-737 |
| Cow position: | chr14:45850608-45851022 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 333-681 |
| Cow position: | chr14:9044946-9045310 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-683 |
| Cow position: | chr14:17001674-17001308 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 87, 207 |
| Conread position: | 333-684 |
| Cow position: | chr14:7471757-7472121 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 66, 160 |
| Conread position: | 333-684 |
| Cow position: | chr14:11154772-11154418 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 333-684 |
| Cow position: | chr14:13302412-13302777 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-684 |
| Cow position: | chr14:16273915-16273548 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 165 |
| Conread position: | 333-684 |
| Cow position: | chr14:19328885-19328521 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 333-684 |
| Cow position: | chr14:22032301-22031940 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 66, 158 |
| Conread position: | 333-684 |
| Cow position: | chr14:28994474-28994107 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 333-684 |
| Cow position: | chr14:37223283-37223649 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 333-690 |
| Cow position: | chr14:40339091-40339436 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 333-696 |
| Cow position: | chr14:5528448-5528823 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 333-699 |
| Cow position: | chr14:749950-750332 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr14:7831158-7830778 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 84 |
| Conread position: | 333-699 |
| Cow position: | chr14:17492076-17491694 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 226 |
| Conread position: | 333-699 |
| Cow position: | chr14:23256742-23257121 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 194 |
| Conread position: | 333-699 |
| Cow position: | chr14:29048517-29048141 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 333-699 |
| Cow position: | chr14:30585555-30585189 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-699 |
| Cow position: | chr14:33394395-33394014 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr14:36967640-36968017 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 333-703 |
| Cow position: | chr14:16920301-16919924 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-703 |
| Cow position: | chr14:20781837-20782222 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-705 |
| Cow position: | chr14:17684777-17685166 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 333-708 |
| Cow position: | chr14:44685429-44685816 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 214 |
| Conread position: | 334-664 |
| Cow position: | chr14:40170292-40169958 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 142, 60 |
| Conread position: | 334-712 |
| Cow position: | chr14:35928563-35928957 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 336-690 |
| Cow position: | chr14:45303976-45303611 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 354-674 |
| Cow position: | chr14:33235405-33235720 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 362-623 |
| Cow position: | chr14:30707258-30706985 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 374-684 |
| Cow position: | chr14:47640571-47640888 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 375-674 |
| Cow position: | chr14:31607495-31607192 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 375-684 |
| Cow position: | chr14:47589296-47589617 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 199 |
| Conread position: | 375-705 |
| Cow position: | chr14:43034454-43034117 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 377-699 |
| Cow position: | chr14:2283764-2284101 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 377-709 |
| Cow position: | chr14:11468024-11468357 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 382-683 |
| Cow position: | chr14:47654181-47654481 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 386-684 |
| Cow position: | chr14:15277141-15276833 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 386-696 |
| Cow position: | chr14:44261641-44261334 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 386-699 |
| Cow position: | chr14:38532858-38532530 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 388-737 |
| Cow position: | chr14:23529570-23529227 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 389-699 |
| Cow position: | chr14:46464509-46464835 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 107 |
| Conread position: | 398-677 |
| Cow position: | chr14:31887125-31887417 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 250 |
| Conread position: | 426-623 |
| Cow position: | chr14:44580397-44580606 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 460-702 |
| Cow position: | chr14:42123669-42123435 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 472-686 |
| Cow position: | chr14:41407353-41407571 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 472-699 |
| Cow position: | chr14:13864552-13864321 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 472-701 |
| Cow position: | chr14:9102562-9102334 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 132, 152 |
| Conread position: | 472-712 |
| Cow position: | chr14:41085251-41085007 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 488-712 |
| Cow position: | chr14:37414341-37414108 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
Show alignments to all cow chromosomes.