Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-707 |
| Cow position: | chr16:24155738-24155020 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 5-157 |
| Cow position: | chr16:16818927-16818776 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 5-289 |
| Cow position: | chr16:14668983-14669259 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 154, 39 |
| Conread position: | 7-237 |
| Cow position: | chr16:25293050-25293275 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 39-707 |
| Cow position: | chr16:28439056-28438364 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 25 |
| Conread position: | 163-593 |
| Cow position: | chr16:13017773-13018214 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 318-645 |
| Cow position: | chr16:25166734-25167034 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 319-597 |
| Cow position: | chr16:55080328-55080046 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 7 |
| Conread position: | 319-655 |
| Cow position: | chr16:14669320-14669663 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 327-684 |
| Cow position: | chr16:36232575-36232209 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 242 |
| Conread position: | 327-696 |
| Cow position: | chr16:16276475-16276092 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 76, 211 |
| Conread position: | 329-457 |
| Cow position: | chr16:25293635-25293765 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 332-659 |
| Cow position: | chr16:29676271-29675934 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 78, 166 |
| Conread position: | 332-683 |
| Cow position: | chr16:5888520-5888866 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 332-684 |
| Cow position: | chr16:25084657-25085022 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 245 |
| Conread position: | 332-684 |
| Cow position: | chr16:36362313-36361961 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 332-699 |
| Cow position: | chr16:11052207-11052578 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 332-699 |
| Cow position: | chr16:20255276-20254895 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 71, 246 |
| Conread position: | 332-699 |
| Cow position: | chr16:36282433-36282820 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 71, 167 |
| Conread position: | 332-705 |
| Cow position: | chr16:6549486-6549100 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 333-682 |
| Cow position: | chr16:25341007-25341364 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 333-684 |
| Cow position: | chr16:1568414-1568053 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 333-684 |
| Cow position: | chr16:2411934-2411568 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 333-684 |
| Cow position: | chr16:4303434-4303076 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 333-684 |
| Cow position: | chr16:8817069-8816703 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 92 |
| Conread position: | 333-684 |
| Cow position: | chr16:10204379-10204029 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 204 |
| Conread position: | 333-684 |
| Cow position: | chr16:10437293-10437644 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 267, 79 |
| Conread position: | 333-684 |
| Cow position: | chr16:12538889-12538523 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-684 |
| Cow position: | chr16:15183842-15184204 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 79 |
| Conread position: | 333-684 |
| Cow position: | chr16:15565786-15566151 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 161 |
| Conread position: | 333-684 |
| Cow position: | chr16:23982347-23982712 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 202 |
| Conread position: | 333-684 |
| Cow position: | chr16:25440655-25441019 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 333-684 |
| Cow position: | chr16:25458434-25458070 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 333-684 |
| Cow position: | chr16:26662786-26663149 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 333-684 |
| Cow position: | chr16:28171323-28170961 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 333-684 |
| Cow position: | chr16:43898233-43897866 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 165 |
| Conread position: | 333-688 |
| Cow position: | chr16:1430263-1430628 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 78, 162 |
| Conread position: | 333-698 |
| Cow position: | chr16:25157181-25156806 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 130, 241 |
| Conread position: | 333-699 |
| Cow position: | chr16:5918520-5918899 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr16:6942658-6943040 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-703 |
| Cow position: | chr16:40297139-40296758 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 333-707 |
| Cow position: | chr16:27734769-27734379 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-714 |
| Cow position: | chr16:407996-407602 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 142 |
| Conread position: | 333-721 |
| Cow position: | chr16:31592871-31592464 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 77, 401 |
| Conread position: | 334-684 |
| Cow position: | chr16:23253467-23253106 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 75, 204 |
| Conread position: | 335-690 |
| Cow position: | chr16:15491745-15492115 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 205 |
| Conread position: | 339-684 |
| Cow position: | chr16:10808208-10808554 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 133, 66 |
| Conread position: | 339-697 |
| Cow position: | chr16:56551170-56551541 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 248 |
| Conread position: | 342-716 |
| Cow position: | chr16:31793-32177 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 186 |
| Conread position: | 354-684 |
| Cow position: | chr16:39820695-39821033 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 360-589 |
| Cow position: | chr16:41758400-41758175 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 366-697 |
| Cow position: | chr16:41559745-41560073 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 373-602 |
| Cow position: | chr16:30047614-30047840 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 373-645 |
| Cow position: | chr16:29091908-29091625 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 375-684 |
| Cow position: | chr16:836108-836430 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 377-700 |
| Cow position: | chr16:11111856-11111525 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 207 |
| Conread position: | 378-699 |
| Cow position: | chr16:2239650-2239316 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 382-657 |
| Cow position: | chr16:26517922-26517636 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 270 |
| Conread position: | 382-690 |
| Cow position: | chr16:335389-335697 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 386-705 |
| Cow position: | chr16:40887166-40886836 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 276 |
| Conread position: | 396-684 |
| Cow position: | chr16:51685534-51685838 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 411-684 |
| Cow position: | chr16:14666715-14666428 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 456-684 |
| Cow position: | chr16:25294014-25294229 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 472-684 |
| Cow position: | chr16:16029973-16030187 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 120, 89 |
| Conread position: | 495-684 |
| Cow position: | chr16:10566071-10565881 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 503-701 |
| Cow position: | chr16:2728084-2727883 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 61 |
Show alignments to all cow chromosomes.