Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 103-615 |
| Cow position: | chr17:13894160-13893625 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 287 |
| Conread position: | 217-686 |
| Cow position: | chr17:4671683-4672173 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 299-631 |
| Cow position: | chr17:3710476-3710147 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 331-681 |
| Cow position: | chr17:1946586-1946952 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 68, 169 |
| Conread position: | 331-700 |
| Cow position: | chr17:18185914-18185537 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 332-682 |
| Cow position: | chr17:14325882-14325525 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 332-683 |
| Cow position: | chr17:23857421-23857056 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 161 |
| Conread position: | 332-684 |
| Cow position: | chr17:27345419-27345778 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 332-684 |
| Cow position: | chr17:35591826-35592192 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-696 |
| Cow position: | chr17:22429871-22429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 65, 83 |
| Conread position: | 332-699 |
| Cow position: | chr17:20183614-20183237 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 332-699 |
| Cow position: | chr17:44853317-44852938 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 333-669 |
| Cow position: | chr17:228689-228339 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 249 |
| Conread position: | 333-676 |
| Cow position: | chr17:43988150-43988508 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-681 |
| Cow position: | chr17:19269752-19269390 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 333-683 |
| Cow position: | chr17:3643224-3642858 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-684 |
| Cow position: | chr17:11088109-11087745 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 118, 75 |
| Conread position: | 333-684 |
| Cow position: | chr17:15322443-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 333-684 |
| Cow position: | chr17:18104068-18103701 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 333-684 |
| Cow position: | chr17:42264139-42264482 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 268, 69 |
| Conread position: | 333-685 |
| Cow position: | chr17:25737276-25737643 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 333-696 |
| Cow position: | chr17:2261722-2262099 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr17:1383199-1382820 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 333-699 |
| Cow position: | chr17:6089549-6089167 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr17:9653837-9653462 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 57 |
| Conread position: | 333-699 |
| Cow position: | chr17:14217412-14217030 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 230 |
| Conread position: | 333-699 |
| Cow position: | chr17:15157347-15156969 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 333-699 |
| Cow position: | chr17:15435403-15435785 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 66, 88 |
| Conread position: | 333-699 |
| Cow position: | chr17:24780660-24781042 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 230 |
| Conread position: | 333-707 |
| Cow position: | chr17:1879704-1880095 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 333-708 |
| Cow position: | chr17:13857161-13856767 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 78, 386 |
| Conread position: | 333-708 |
| Cow position: | chr17:20666114-20665724 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-714 |
| Cow position: | chr17:8208722-8209113 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-715 |
| Cow position: | chr17:14893775-14894174 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 354-699 |
| Cow position: | chr17:15143730-15143373 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 354-707 |
| Cow position: | chr17:15381642-15381981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 375-678 |
| Cow position: | chr17:2587990-2588284 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 236, 58 |
| Conread position: | 375-699 |
| Cow position: | chr17:16889779-16890113 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 386-671 |
| Cow position: | chr17:20088062-20087766 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 386-684 |
| Cow position: | chr17:6259513-6259824 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 394-699 |
| Cow position: | chr17:2287066-2287380 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 395-684 |
| Cow position: | chr17:22131910-22132209 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 397-684 |
| Cow position: | chr17:1658891-1658596 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 472-703 |
| Cow position: | chr17:18026994-18026757 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 14 |
Show alignments to all cow chromosomes.