Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-288 |
| Cow position: | chr18:9187297-9187013 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 19-684 |
| Cow position: | chr18:46878485-46877821 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 22-699 |
| Cow position: | chr18:48221381-48222081 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 317 |
| Conread position: | 318-706 |
| Cow position: | chr18:1520931-1521337 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 185 |
| Conread position: | 319-684 |
| Cow position: | chr18:16393833-16393461 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 321-697 |
| Cow position: | chr18:6869446-6869059 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 329-684 |
| Cow position: | chr18:9186947-9186581 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 341 |
| Conread position: | 331-699 |
| Cow position: | chr18:47719747-47719382 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 263, 74 |
| Conread position: | 332-659 |
| Cow position: | chr18:17992742-17992403 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 332-683 |
| Cow position: | chr18:53785660-53786025 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 332-684 |
| Cow position: | chr18:32293594-32293953 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 332-684 |
| Cow position: | chr18:33268660-33269012 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 124 |
| Conread position: | 332-684 |
| Cow position: | chr18:33358687-33359053 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 332-684 |
| Cow position: | chr18:43147105-43146739 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 332-684 |
| Cow position: | chr18:44601362-44601706 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 18 |
| Conread position: | 332-699 |
| Cow position: | chr18:2019864-2019484 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 332-699 |
| Cow position: | chr18:23944552-23944173 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-699 |
| Cow position: | chr18:51257802-51258185 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 124 |
| Conread position: | 332-699 |
| Cow position: | chr18:51310402-51310787 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 104 |
| Conread position: | 332-703 |
| Cow position: | chr18:35335308-35335685 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 83 |
| Conread position: | 332-712 |
| Cow position: | chr18:39748401-39748796 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 333-656 |
| Cow position: | chr18:16660184-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 333-684 |
| Cow position: | chr18:14415799-14416163 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-684 |
| Cow position: | chr18:23797471-23797834 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 118, 161 |
| Conread position: | 333-684 |
| Cow position: | chr18:27838483-27838129 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 123 |
| Conread position: | 333-684 |
| Cow position: | chr18:36508153-36508519 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr18:37504885-37505250 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 333-684 |
| Cow position: | chr18:41841005-41840638 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr18:51480660-51481026 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-690 |
| Cow position: | chr18:54024536-54024167 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 333-699 |
| Cow position: | chr18:11275280-11274904 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 66, 96 |
| Conread position: | 333-699 |
| Cow position: | chr18:16533804-16534180 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 333-699 |
| Cow position: | chr18:47741838-47742220 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 334-699 |
| Cow position: | chr18:55089104-55088723 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 219 |
| Conread position: | 334-707 |
| Cow position: | chr18:28974079-28973694 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 123, 62 |
| Conread position: | 335-684 |
| Cow position: | chr18:33335693-33336054 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 116, 61 |
| Conread position: | 339-690 |
| Cow position: | chr18:43200892-43201247 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 344-681 |
| Cow position: | chr18:2887194-2886837 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 382-708 |
| Cow position: | chr18:29946064-29946393 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 84, 108 |
| Conread position: | 385-673 |
| Cow position: | chr18:35288402-35288714 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 386-684 |
| Cow position: | chr18:18897377-18897678 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 386-699 |
| Cow position: | chr18:51341562-51341888 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 485-699 |
| Cow position: | chr18:114377-114593 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 50 |
Show alignments to all cow chromosomes.