Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-288 |
| Cow position: | chr20:18328849-18328573 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 6-289 |
| Cow position: | chr20:19367866-19367573 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 17-633 |
| Cow position: | chr20:4800177-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 382 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 255, 150 |
| Conread position: | 332-636 |
| Cow position: | chr20:35973632-35973309 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 332-699 |
| Cow position: | chr20:24614330-24614697 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 332-721 |
| Cow position: | chr20:5483971-5484376 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 333-673 |
| Cow position: | chr20:21393354-21393701 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 132, 75 |
| Conread position: | 333-676 |
| Cow position: | chr20:28160562-28160915 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 333-682 |
| Cow position: | chr20:13762687-13763049 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 333-684 |
| Cow position: | chr20:3270499-3270852 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 139, 53 |
| Conread position: | 333-684 |
| Cow position: | chr20:5534723-5535085 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-684 |
| Cow position: | chr20:7116689-7116321 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 72, 208 |
| Conread position: | 333-684 |
| Cow position: | chr20:23469879-23469511 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 333-684 |
| Cow position: | chr20:27868978-27869345 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 232 |
| Conread position: | 333-684 |
| Cow position: | chr20:30684120-30684483 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 161 |
| Conread position: | 333-696 |
| Cow position: | chr20:28565819-28565434 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 59, 211 |
| Conread position: | 333-699 |
| Cow position: | chr20:5560934-5560552 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr20:23798663-23799045 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-703 |
| Cow position: | chr20:25851209-25850824 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-706 |
| Cow position: | chr20:12438980-12438591 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 66, 236 |
| Conread position: | 333-709 |
| Cow position: | chr20:21914107-21914502 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 334-699 |
| Cow position: | chr20:3252351-3251971 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 334-699 |
| Cow position: | chr20:8313651-8313277 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 334-703 |
| Cow position: | chr20:15098088-15097711 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 343-684 |
| Cow position: | chr20:35119365-35119718 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 360-676 |
| Cow position: | chr20:18328246-18327929 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 361-691 |
| Cow position: | chr20:2676929-2677272 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 372-669 |
| Cow position: | chr20:20905367-20905070 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 375-684 |
| Cow position: | chr20:24516859-24517179 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 375-684 |
| Cow position: | chr20:29948341-29948647 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 375-701 |
| Cow position: | chr20:2791519-2791190 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 375-703 |
| Cow position: | chr20:13665373-13665043 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 376-644 |
| Cow position: | chr20:22717867-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 377-645 |
| Cow position: | chr20:7085747-7085471 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 378-697 |
| Cow position: | chr20:8835806-8835478 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 382-684 |
| Cow position: | chr20:15291851-15292158 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 386-684 |
| Cow position: | chr20:8004386-8004078 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 386-696 |
| Cow position: | chr20:31379046-31378725 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 395-690 |
| Cow position: | chr20:9954137-9953831 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 411-699 |
| Cow position: | chr20:822628-822930 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 474-684 |
| Cow position: | chr20:13680122-13679910 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 485-699 |
| Cow position: | chr20:3033006-3033224 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 498-684 |
| Cow position: | chr20:10841283-10841098 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 35 |
Show alignments to all cow chromosomes.