Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-289 |
| Cow position: | chr21:26094360-26094649 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 5-267 |
| Cow position: | chr21:34002745-34002481 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 5-289 |
| Cow position: | chr21:993477-993193 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 153, 41 |
| Conread position: | 22-684 |
| Cow position: | chr21:2884175-2883481 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 429 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 313-703 |
| Cow position: | chr21:47947989-47948395 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 102 |
| Conread position: | 319-707 |
| Cow position: | chr21:993136-992740 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 320-696 |
| Cow position: | chr21:21947913-21947522 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 327-527 |
| Cow position: | chr21:4083544-4083752 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 329-699 |
| Cow position: | chr21:4076744-4077121 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 87, 67 |
| Conread position: | 332-674 |
| Cow position: | chr21:2716779-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 332-684 |
| Cow position: | chr21:13124096-13123737 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 332-684 |
| Cow position: | chr21:34259313-34258963 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 332-684 |
| Cow position: | chr21:34292918-34293283 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 71, 245 |
| Conread position: | 332-696 |
| Cow position: | chr21:4183437-4183801 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 332-697 |
| Cow position: | chr21:358915-359300 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 57, 197 |
| Conread position: | 332-699 |
| Cow position: | chr21:3426387-3426767 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 332-699 |
| Cow position: | chr21:47939378-47939758 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 173 |
| Conread position: | 332-701 |
| Cow position: | chr21:4222788-4222402 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 73, 166 |
| Conread position: | 332-703 |
| Cow position: | chr21:2541516-2541126 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 71, 199 |
| Conread position: | 332-703 |
| Cow position: | chr21:35596270-35596654 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 332-712 |
| Cow position: | chr21:4456729-4457124 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 333-653 |
| Cow position: | chr21:26819114-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 57 |
| Conread position: | 333-682 |
| Cow position: | chr21:33251292-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-683 |
| Cow position: | chr21:2769562-2769195 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 166 |
| Conread position: | 333-684 |
| Cow position: | chr21:145820-146190 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 333-684 |
| Cow position: | chr21:3778668-3779033 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 205 |
| Conread position: | 333-684 |
| Cow position: | chr21:10849980-10850347 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 333-684 |
| Cow position: | chr21:11505487-11505854 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 333-684 |
| Cow position: | chr21:30561702-30562069 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-695 |
| Cow position: | chr21:4090551-4090927 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 333-696 |
| Cow position: | chr21:26638563-26638184 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 194 |
| Conread position: | 333-699 |
| Cow position: | chr21:2476610-2476245 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 146 |
| Conread position: | 333-699 |
| Cow position: | chr21:2510555-2510933 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 74 |
| Conread position: | 333-699 |
| Cow position: | chr21:12056097-12055719 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 333-703 |
| Cow position: | chr21:9891511-9891878 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 333-703 |
| Cow position: | chr21:10566578-10566959 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-703 |
| Cow position: | chr21:31559755-31559370 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 209 |
| Conread position: | 334-707 |
| Cow position: | chr21:7267635-7267255 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 63 |
| Conread position: | 335-699 |
| Cow position: | chr21:39424965-39425345 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 194 |
| Conread position: | 336-683 |
| Cow position: | chr21:25992716-25992367 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 58 |
| Conread position: | 341-684 |
| Cow position: | chr21:6699647-6699311 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 375-658 |
| Cow position: | chr21:3615234-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 375-690 |
| Cow position: | chr21:1292230-1291918 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 375-696 |
| Cow position: | chr21:2416181-2416508 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 376-684 |
| Cow position: | chr21:26823284-26822967 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 382-696 |
| Cow position: | chr21:21914237-21914567 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 386-684 |
| Cow position: | chr21:23811832-23812142 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 386-705 |
| Cow position: | chr21:33755261-33755591 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 390-685 |
| Cow position: | chr21:23601157-23601462 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 177 |
| Conread position: | 395-721 |
| Cow position: | chr21:4590026-4589685 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 335 |
| Conread position: | 422-699 |
| Cow position: | chr21:6339557-6339848 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 424-647 |
| Cow position: | chr21:3194389-3194615 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 459-684 |
| Cow position: | chr21:37147556-37147774 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 470-703 |
| Cow position: | chr21:40271625-40271391 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 472-641 |
| Cow position: | chr21:10762457-10762620 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 474-684 |
| Cow position: | chr21:18692776-18692983 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 485-666 |
| Cow position: | chr21:34054678-34054495 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 101 |
Show alignments to all cow chromosomes.