Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-283 |
| Cow position: | chr22:8873248-8873534 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 5-172 |
| Cow position: | chr22:36592946-36592784 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 5-258 |
| Cow position: | chr22:10964568-10964819 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 5-288 |
| Cow position: | chr22:36581705-36581435 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 5-333 |
| Cow position: | chr22:35944018-35943692 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 5-707 |
| Cow position: | chr22:293771-293044 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 24 |
| Conread position: | 157-684 |
| Cow position: | chr22:44609167-44609690 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 273-684 |
| Cow position: | chr22:11782862-11782434 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 318-673 |
| Cow position: | chr22:46635986-46635626 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 139 |
| Conread position: | 318-699 |
| Cow position: | chr22:36736483-36736867 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 327-549 |
| Cow position: | chr22:35943670-35943443 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 129, 8 |
| Conread position: | 328-526 |
| Cow position: | chr22:10964911-10965118 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 202 |
| Conread position: | 328-690 |
| Cow position: | chr22:1293771-1293396 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 331-566 |
| Cow position: | chr22:13493247-13493474 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 332-684 |
| Cow position: | chr22:7277249-7277615 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 73, 247 |
| Conread position: | 332-684 |
| Cow position: | chr22:32485606-32485258 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 238, 73 |
| Conread position: | 332-699 |
| Cow position: | chr22:1319122-1319506 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 332-699 |
| Cow position: | chr22:5672465-5672846 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 332-699 |
| Cow position: | chr22:8136470-8136095 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 211 |
| Conread position: | 332-699 |
| Cow position: | chr22:39882446-39882067 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 333-673 |
| Cow position: | chr22:1321343-1321690 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 18 |
| Conread position: | 333-682 |
| Cow position: | chr22:8149807-8149460 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 70, 135 |
| Conread position: | 333-684 |
| Cow position: | chr22:560972-560611 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 77, 159 |
| Conread position: | 333-684 |
| Cow position: | chr22:19143970-19143605 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 333-684 |
| Cow position: | chr22:21589060-21589418 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 159 |
| Conread position: | 333-684 |
| Cow position: | chr22:31313072-31313435 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 333-684 |
| Cow position: | chr22:34168059-34168426 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr22:36861803-36861436 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr22:42990899-42991266 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 165 |
| Conread position: | 333-684 |
| Cow position: | chr22:44933707-44934073 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 77, 207 |
| Conread position: | 333-696 |
| Cow position: | chr22:17329012-17328631 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-699 |
| Cow position: | chr22:1878519-1878902 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr22:5233574-5233196 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 118, 72 |
| Conread position: | 333-699 |
| Cow position: | chr22:6503943-6503568 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 67, 129 |
| Conread position: | 333-699 |
| Cow position: | chr22:24949557-24949939 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr22:35672628-35672247 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr22:44489618-44489996 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 118, 27 |
| Conread position: | 333-703 |
| Cow position: | chr22:39469790-39469410 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 334-677 |
| Cow position: | chr22:31335304-31334946 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 205 |
| Conread position: | 335-703 |
| Cow position: | chr22:36183488-36183871 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 339-699 |
| Cow position: | chr22:3278620-3278245 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 342-660 |
| Cow position: | chr22:27283785-27284114 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 343-699 |
| Cow position: | chr22:693369-693735 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 202 |
| Conread position: | 371-701 |
| Cow position: | chr22:33350935-33351281 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 374-684 |
| Cow position: | chr22:46853117-46853437 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 375-684 |
| Cow position: | chr22:871086-870772 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 169 |
| Conread position: | 375-699 |
| Cow position: | chr22:536870-537210 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 178 |
| Conread position: | 377-684 |
| Cow position: | chr22:13917278-13917597 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 377-684 |
| Cow position: | chr22:15851110-15851424 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 377-707 |
| Cow position: | chr22:27386660-27386312 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 388-690 |
| Cow position: | chr22:298546-298239 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 389-701 |
| Cow position: | chr22:36267158-36267472 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 419-684 |
| Cow position: | chr22:32348163-32347887 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 424-696 |
| Cow position: | chr22:34606883-34607165 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 472-708 |
| Cow position: | chr22:46547786-46547547 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 474-684 |
| Cow position: | chr22:20240961-20240747 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 474-690 |
| Cow position: | chr22:36581286-36581078 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 475-684 |
| Cow position: | chr22:8874874-8875083 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 479-712 |
| Cow position: | chr22:45975862-45976094 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 81 |
| Conread position: | 485-699 |
| Cow position: | chr22:36533849-36533634 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 495-690 |
| Cow position: | chr22:15956794-15956598 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 505-698 |
| Cow position: | chr22:41238088-41238283 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 552-696 |
| Cow position: | chr22:35943250-35943099 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 59 |
Show alignments to all cow chromosomes.