Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 2-699 |
| Cow position: | chr23:5875380-5874665 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 443 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 131, 86 |
| Conread position: | 5-170 |
| Cow position: | chr23:6214114-6214278 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 5-252 |
| Cow position: | chr23:1322460-1322211 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 326-699 |
| Cow position: | chr23:4359550-4359939 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 327-684 |
| Cow position: | chr23:13508791-13509152 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 332-669 |
| Cow position: | chr23:7273387-7273715 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 332-682 |
| Cow position: | chr23:4276685-4277047 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 332-684 |
| Cow position: | chr23:34174910-34175274 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 316 |
| Conread position: | 332-699 |
| Cow position: | chr23:988914-988537 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 332-699 |
| Cow position: | chr23:16617124-16616739 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 332-703 |
| Cow position: | chr23:5779358-5778974 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 333-683 |
| Cow position: | chr23:3881967-3881612 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 333-684 |
| Cow position: | chr23:967620-967251 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 167 |
| Conread position: | 333-684 |
| Cow position: | chr23:2027388-2027025 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 333-684 |
| Cow position: | chr23:2313510-2313144 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-684 |
| Cow position: | chr23:2795834-2795471 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 203 |
| Conread position: | 333-684 |
| Cow position: | chr23:4434192-4434553 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 192 |
| Conread position: | 333-684 |
| Cow position: | chr23:4640897-4640530 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr23:4815802-4816169 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 333-684 |
| Cow position: | chr23:15176802-15177168 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 77, 207 |
| Conread position: | 333-684 |
| Cow position: | chr23:15525341-15525704 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 132, 64 |
| Conread position: | 333-684 |
| Cow position: | chr23:19489268-19489636 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 115, 63 |
| Conread position: | 333-684 |
| Cow position: | chr23:28217018-28217384 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-684 |
| Cow position: | chr23:28913140-28913491 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 163 |
| Conread position: | 333-696 |
| Cow position: | chr23:11778213-11778578 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 333-707 |
| Cow position: | chr23:4888408-4888792 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 333-707 |
| Cow position: | chr23:20301939-20302329 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 66, 388 |
| Conread position: | 333-708 |
| Cow position: | chr23:30636574-30636185 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 333-712 |
| Cow position: | chr23:27399231-27399629 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 335-684 |
| Cow position: | chr23:36031639-36031279 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 354-684 |
| Cow position: | chr23:1025307-1024966 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 375-699 |
| Cow position: | chr23:2340172-2340503 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 375-699 |
| Cow position: | chr23:2524426-2524088 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 377-684 |
| Cow position: | chr23:19332625-19332313 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 126 |
| Conread position: | 385-721 |
| Cow position: | chr23:14974782-14974430 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 386-678 |
| Cow position: | chr23:3013427-3013734 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 389-684 |
| Cow position: | chr23:14965961-14965658 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 420-710 |
| Cow position: | chr23:26836121-26836398 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 425-684 |
| Cow position: | chr23:6216396-6216664 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 207 |
| Conread position: | 466-684 |
| Cow position: | chr23:29474681-29474463 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 471-684 |
| Cow position: | chr23:25684178-25683967 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 472-707 |
| Cow position: | chr23:31591930-31591686 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 509-701 |
| Cow position: | chr23:36211213-36211016 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 32 |
Show alignments to all cow chromosomes.