Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-694 |
| Cow position: | chr28:10591943-10591238 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 20-288 |
| Cow position: | chr28:29437702-29437437 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 21-289 |
| Cow position: | chr28:8783531-8783800 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 22-683 |
| Cow position: | chr28:3193342-3192654 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 421 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 132, 136 |
| Conread position: | 71-699 |
| Cow position: | chr28:2591426-2592068 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 397 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 124, 162 |
| Conread position: | 104-684 |
| Cow position: | chr28:18102385-18101805 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 381 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 242-699 |
| Cow position: | chr28:24667269-24667733 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 154, 81 |
| Conread position: | 313-699 |
| Cow position: | chr28:4381064-4380691 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 332-602 |
| Cow position: | chr28:17330749-17330474 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 332-663 |
| Cow position: | chr28:24652062-24652398 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 332-696 |
| Cow position: | chr28:34648708-34649095 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 332-764 |
| Cow position: | chr28:9953906-9954351 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 139 |
| Conread position: | 333-678 |
| Cow position: | chr28:26426500-26426145 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 333-682 |
| Cow position: | chr28:2083376-2083732 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 63, 81 |
| Conread position: | 333-682 |
| Cow position: | chr28:21358792-21359138 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 333-683 |
| Cow position: | chr28:24587205-24587572 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-684 |
| Cow position: | chr28:1504627-1504990 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 72, 161 |
| Conread position: | 333-684 |
| Cow position: | chr28:8378339-8378707 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 333-684 |
| Cow position: | chr28:8721670-8721309 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 64 |
| Conread position: | 333-684 |
| Cow position: | chr28:12150094-12150449 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 333-684 |
| Cow position: | chr28:13459743-13460108 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 163 |
| Conread position: | 333-684 |
| Cow position: | chr28:15378220-15377853 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 333-684 |
| Cow position: | chr28:17667740-17667375 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 66, 104 |
| Conread position: | 333-684 |
| Cow position: | chr28:22261379-22261012 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 333-684 |
| Cow position: | chr28:32792607-32792241 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-690 |
| Cow position: | chr28:5565633-5566007 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 66, 208 |
| Conread position: | 333-699 |
| Cow position: | chr28:7822026-7822411 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 333-699 |
| Cow position: | chr28:14750320-14750701 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 66, 229 |
| Conread position: | 333-699 |
| Cow position: | chr28:15950753-15951133 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-703 |
| Cow position: | chr28:10582213-10581829 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 206 |
| Conread position: | 333-703 |
| Cow position: | chr28:15920694-15920308 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 155 |
| Conread position: | 333-703 |
| Cow position: | chr28:18520689-18520306 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-705 |
| Cow position: | chr28:13441105-13440715 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-718 |
| Cow position: | chr28:1387618-1387221 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 334-684 |
| Cow position: | chr28:17388254-17388620 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 65, 164 |
| Conread position: | 335-708 |
| Cow position: | chr28:6780555-6780172 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 353-682 |
| Cow position: | chr28:12233183-12232862 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 368-633 |
| Cow position: | chr28:34324633-34324901 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 368-710 |
| Cow position: | chr28:15585201-15585546 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 375-682 |
| Cow position: | chr28:782212-782531 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 52 |
| Conread position: | 375-684 |
| Cow position: | chr28:33252134-33252452 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 385-696 |
| Cow position: | chr28:5114976-5114659 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 232 |
| Conread position: | 400-684 |
| Cow position: | chr28:6657467-6657167 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 402-696 |
| Cow position: | chr28:17935192-17934885 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 411-684 |
| Cow position: | chr28:7740347-7740624 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 487-684 |
| Cow position: | chr28:22065797-22065602 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.