Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 2-714 |
| Cow position: | chr29:16017748-16017018 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 22-682 |
| Cow position: | chr29:30810956-30811631 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 425 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 91-678 |
| Cow position: | chr29:24199131-24198524 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 94-696 |
| Cow position: | chr29:8063399-8062781 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 80 |
| Conread position: | 321-659 |
| Cow position: | chr29:10848389-10848029 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 332-608 |
| Cow position: | chr29:30108838-30109105 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 332-676 |
| Cow position: | chr29:27041023-27040669 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 332-684 |
| Cow position: | chr29:104316-104671 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 125, 45 |
| Conread position: | 332-696 |
| Cow position: | chr29:11049021-11049396 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 121, 163 |
| Conread position: | 332-698 |
| Cow position: | chr29:16769869-16770242 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 78, 162 |
| Conread position: | 332-699 |
| Cow position: | chr29:43366260-43365873 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 69, 164 |
| Conread position: | 332-716 |
| Cow position: | chr29:35196413-35196806 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 333-668 |
| Cow position: | chr29:31180861-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-676 |
| Cow position: | chr29:2841627-2841273 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 333-682 |
| Cow position: | chr29:26165084-26164720 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-683 |
| Cow position: | chr29:38226732-38227083 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 333-684 |
| Cow position: | chr29:2689643-2690006 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 118, 80 |
| Conread position: | 333-684 |
| Cow position: | chr29:7431478-7431111 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 207 |
| Conread position: | 333-684 |
| Cow position: | chr29:9643983-9643655 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 333-684 |
| Cow position: | chr29:10648507-10648147 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 333-684 |
| Cow position: | chr29:10824221-10823865 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 258 |
| Conread position: | 333-684 |
| Cow position: | chr29:16109467-16109831 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-684 |
| Cow position: | chr29:19623506-19623143 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 333-684 |
| Cow position: | chr29:25932806-25932440 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-684 |
| Cow position: | chr29:32539548-32539914 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 207 |
| Conread position: | 333-684 |
| Cow position: | chr29:39079968-39079608 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-684 |
| Cow position: | chr29:43322297-43322664 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr29:45459457-45459817 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 333-685 |
| Cow position: | chr29:21246306-21246675 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 208 |
| Conread position: | 333-691 |
| Cow position: | chr29:27250597-27250222 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-696 |
| Cow position: | chr29:610873-610495 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 333-696 |
| Cow position: | chr29:20250897-20251278 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-696 |
| Cow position: | chr29:28060928-28060548 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-703 |
| Cow position: | chr29:19652846-19653231 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 66, 188 |
| Conread position: | 333-712 |
| Cow position: | chr29:13853282-13852890 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 333-746 |
| Cow position: | chr29:5957341-5957770 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 71, 225 |
| Conread position: | 335-684 |
| Cow position: | chr29:2099584-2099949 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 205 |
| Conread position: | 335-684 |
| Cow position: | chr29:6266754-6266397 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 64, 205 |
| Conread position: | 335-699 |
| Cow position: | chr29:7840536-7840916 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 61, 194 |
| Conread position: | 336-707 |
| Cow position: | chr29:15950438-15950062 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 50 |
| Conread position: | 354-696 |
| Cow position: | chr29:4635207-4634857 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 211 |
| Conread position: | 362-633 |
| Cow position: | chr29:2368132-2367856 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 37, 205 |
| Conread position: | 375-684 |
| Cow position: | chr29:48696-48374 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 183 |
| Conread position: | 375-696 |
| Cow position: | chr29:14013252-14013582 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 184 |
| Conread position: | 375-696 |
| Cow position: | chr29:14073159-14072829 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 184 |
| Conread position: | 379-699 |
| Cow position: | chr29:21543582-21543250 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 389-699 |
| Cow position: | chr29:18857138-18856825 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 411-699 |
| Cow position: | chr29:19884887-19885189 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 150 |
| Conread position: | 433-699 |
| Cow position: | chr29:11841507-11841782 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 474-696 |
| Cow position: | chr29:670166-669941 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 43 |
Show alignments to all cow chromosomes.