Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 5-288 |
| Cow position: | chr4:4175560-4175837 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-684 |
| Cow position: | chr4:1497637-1496932 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 203-684 |
| Cow position: | chr4:969699-969217 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 320-708 |
| Cow position: | chr4:1464473-1464075 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 324-682 |
| Cow position: | chr4:24198740-24198389 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 326-684 |
| Cow position: | chr4:496484-496130 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 332-676 |
| Cow position: | chr4:60673364-60673688 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 332-684 |
| Cow position: | chr4:28830498-28830856 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 332-684 |
| Cow position: | chr4:33493271-33493635 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 244 |
| Conread position: | 332-696 |
| Cow position: | chr4:6215093-6214718 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 332-699 |
| Cow position: | chr4:66179527-66179146 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 332-703 |
| Cow position: | chr4:66925464-66925845 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 333-672 |
| Cow position: | chr4:3125241-3125595 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-676 |
| Cow position: | chr4:36895834-36896192 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-681 |
| Cow position: | chr4:29532254-29531890 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-683 |
| Cow position: | chr4:41330900-41331263 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 208 |
| Conread position: | 333-684 |
| Cow position: | chr4:355374-355737 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 333-684 |
| Cow position: | chr4:3961055-3961418 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 333-684 |
| Cow position: | chr4:4905614-4905973 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr4:13492036-13492403 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-684 |
| Cow position: | chr4:16056067-16056428 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-684 |
| Cow position: | chr4:18516356-18516723 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr4:40824783-40824426 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 333-684 |
| Cow position: | chr4:48025862-48026224 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 199 |
| Conread position: | 333-696 |
| Cow position: | chr4:16359352-16359724 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 333-696 |
| Cow position: | chr4:30307993-30307618 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 333-696 |
| Cow position: | chr4:43880569-43880950 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-699 |
| Cow position: | chr4:157976-158357 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-699 |
| Cow position: | chr4:528453-528835 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr4:602457-602835 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-699 |
| Cow position: | chr4:1931160-1930782 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 333-699 |
| Cow position: | chr4:6269168-6268786 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr4:13547488-13547871 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 66, 230 |
| Conread position: | 333-699 |
| Cow position: | chr4:18425057-18424683 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 333-699 |
| Cow position: | chr4:47764710-47764328 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-703 |
| Cow position: | chr4:44724543-44724929 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 92, 207 |
| Conread position: | 333-708 |
| Cow position: | chr4:101469-101083 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 230 |
| Conread position: | 336-684 |
| Cow position: | chr4:25600148-25599792 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 336-696 |
| Cow position: | chr4:17530952-17530589 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 118, 88 |
| Conread position: | 339-684 |
| Cow position: | chr4:12241753-12241391 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 201 |
| Conread position: | 342-662 |
| Cow position: | chr4:43320167-43319831 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 198 |
| Conread position: | 354-684 |
| Cow position: | chr4:21338505-21338177 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 354-690 |
| Cow position: | chr4:46663685-46664028 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 100 |
| Conread position: | 360-684 |
| Cow position: | chr4:54157515-54157826 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 364-723 |
| Cow position: | chr4:4175935-4176292 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 375-626 |
| Cow position: | chr4:51044378-51044129 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 375-684 |
| Cow position: | chr4:15263480-15263167 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 375-699 |
| Cow position: | chr4:32211669-32212009 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 375-699 |
| Cow position: | chr4:39272437-39272094 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 384-696 |
| Cow position: | chr4:8598627-8598317 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 176 |
| Conread position: | 385-684 |
| Cow position: | chr4:11618377-11618680 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 385-696 |
| Cow position: | chr4:33073588-33073269 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 158 |
| Conread position: | 386-684 |
| Cow position: | chr4:57979147-57979455 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 390-676 |
| Cow position: | chr4:3829999-3830299 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 392-691 |
| Cow position: | chr4:27332967-27333278 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 400-684 |
| Cow position: | chr4:62565516-62565810 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 152 |
Show alignments to all cow chromosomes.