Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 19-289 |
| Cow position: | chr5:58056514-58056251 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 315-695 |
| Cow position: | chr5:28031022-28031410 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 319-696 |
| Cow position: | chr5:41359190-41358805 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 325-700 |
| Cow position: | chr5:28022714-28023095 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 327-461 |
| Cow position: | chr5:24109488-24109352 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 327-731 |
| Cow position: | chr5:14346825-14346412 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 329-684 |
| Cow position: | chr5:58056184-58055832 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 332-683 |
| Cow position: | chr5:24098202-24098569 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 332-684 |
| Cow position: | chr5:29008913-29009276 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 332-684 |
| Cow position: | chr5:39165243-39164879 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 68, 83 |
| Conread position: | 332-684 |
| Cow position: | chr5:45699834-45700187 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 82, 169 |
| Conread position: | 332-696 |
| Cow position: | chr5:46630871-46630506 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 332-698 |
| Cow position: | chr5:41551371-41550992 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 332-699 |
| Cow position: | chr5:27652435-27652046 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 332-699 |
| Cow position: | chr5:49181835-49182205 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 119, 79 |
| Conread position: | 332-707 |
| Cow position: | chr5:49593905-49593512 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 333-676 |
| Cow position: | chr5:31706129-31706489 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-676 |
| Cow position: | chr5:59060179-59060534 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 112, 84 |
| Conread position: | 333-683 |
| Cow position: | chr5:3964025-3964384 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 230 |
| Conread position: | 333-684 |
| Cow position: | chr5:416165-415801 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 333-684 |
| Cow position: | chr5:1342241-1341872 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 81, 167 |
| Conread position: | 333-684 |
| Cow position: | chr5:2430577-2430211 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 333-684 |
| Cow position: | chr5:2914005-2914372 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr5:3785366-3785711 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 333-684 |
| Cow position: | chr5:4068545-4068911 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 333-684 |
| Cow position: | chr5:7273420-7273773 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 333-684 |
| Cow position: | chr5:25207184-25206819 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 333-684 |
| Cow position: | chr5:30578877-30579243 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 81 |
| Conread position: | 333-684 |
| Cow position: | chr5:32945435-32945795 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 163 |
| Conread position: | 333-684 |
| Cow position: | chr5:37731900-37732267 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr5:48809158-48808794 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 118, 80 |
| Conread position: | 333-684 |
| Cow position: | chr5:49119723-49119360 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 333-684 |
| Cow position: | chr5:53714811-53715175 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 333-684 |
| Cow position: | chr5:55627559-55627908 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 333-684 |
| Cow position: | chr5:57482992-57482625 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-684 |
| Cow position: | chr5:64782462-64782097 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 66, 162 |
| Conread position: | 333-696 |
| Cow position: | chr5:2530825-2531204 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 333-696 |
| Cow position: | chr5:58195557-58195936 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-699 |
| Cow position: | chr5:10776698-10776328 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 333-699 |
| Cow position: | chr5:18665516-18665898 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr5:26079664-26079282 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr5:27909713-27909336 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-699 |
| Cow position: | chr5:31102042-31101661 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 166 |
| Conread position: | 333-699 |
| Cow position: | chr5:32772036-32772418 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr5:45182547-45182167 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 333-699 |
| Cow position: | chr5:46775640-46776016 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 67, 188 |
| Conread position: | 333-699 |
| Cow position: | chr5:54932663-54932282 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-703 |
| Cow position: | chr5:3504692-3504310 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 66, 174 |
| Conread position: | 334-684 |
| Cow position: | chr5:10918353-10918719 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 334-699 |
| Cow position: | chr5:32733689-32733316 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 76, 122 |
| Conread position: | 335-684 |
| Cow position: | chr5:46739028-46738664 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 205 |
| Conread position: | 335-708 |
| Cow position: | chr5:26769370-26769754 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 339-696 |
| Cow position: | chr5:49518227-49518593 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 354-699 |
| Cow position: | chr5:9686838-9686492 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 368-643 |
| Cow position: | chr5:53627169-53626886 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 375-654 |
| Cow position: | chr5:23227857-23228147 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 375-674 |
| Cow position: | chr5:27683168-27682859 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 375-682 |
| Cow position: | chr5:57366420-57366103 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 375-703 |
| Cow position: | chr5:56858100-56857765 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 376-651 |
| Cow position: | chr5:49101235-49101506 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 376-663 |
| Cow position: | chr5:34202544-34202840 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 386-696 |
| Cow position: | chr5:14659476-14659160 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 389-699 |
| Cow position: | chr5:6188181-6188497 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 389-703 |
| Cow position: | chr5:6589408-6589081 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 392-682 |
| Cow position: | chr5:41933199-41932903 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 393-699 |
| Cow position: | chr5:41962618-41962302 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 395-676 |
| Cow position: | chr5:61273560-61273269 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 400-696 |
| Cow position: | chr5:39872047-39872339 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 402-683 |
| Cow position: | chr5:52433617-52433888 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 202, 48 |
| Conread position: | 419-683 |
| Cow position: | chr5:58334941-58334674 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 150 |
| Conread position: | 429-683 |
| Cow position: | chr5:51319590-51319325 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 472-694 |
| Cow position: | chr5:26069008-26068789 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 88 |
| Conread position: | 474-699 |
| Cow position: | chr5:58819927-58819698 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 496-708 |
| Cow position: | chr5:23755893-23755675 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 216 |
| Conread position: | 530-699 |
| Cow position: | chr5:5786836-5786671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 533-699 |
| Cow position: | chr5:52805133-52805302 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.