Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-461 |
| Cow position: | chr6:6542106-6542562 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 315 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 315, 43 |
| Conread position: | 6-684 |
| Cow position: | chr6:34024196-34024872 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 7-285 |
| Cow position: | chr6:10628927-10629209 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 7-734 |
| Cow position: | chr6:39161561-39162303 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 12-289 |
| Cow position: | chr6:59478870-59478588 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 235 |
| Conread position: | 51-684 |
| Cow position: | chr6:6620009-6619377 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 318-461 |
| Cow position: | chr6:59478529-59478390 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 319-684 |
| Cow position: | chr6:35433231-35433597 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 327-541 |
| Cow position: | chr6:31569239-31569019 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 72 |
| Conread position: | 332-644 |
| Cow position: | chr6:62488483-62488158 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 332-684 |
| Cow position: | chr6:42927082-42927446 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 71, 82 |
| Conread position: | 332-684 |
| Cow position: | chr6:59919583-59919215 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 332-696 |
| Cow position: | chr6:525941-526315 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 332-699 |
| Cow position: | chr6:19453624-19453995 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 332-699 |
| Cow position: | chr6:33388532-33388908 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 332-699 |
| Cow position: | chr6:57010156-57009786 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 160, 18 |
| Conread position: | 332-701 |
| Cow position: | chr6:10640825-10641209 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 333-676 |
| Cow position: | chr6:17045761-17046114 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 115, 78 |
| Conread position: | 333-676 |
| Cow position: | chr6:27530302-27529948 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 333-681 |
| Cow position: | chr6:30275486-30275118 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 211 |
| Conread position: | 333-682 |
| Cow position: | chr6:7141775-7141410 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-684 |
| Cow position: | chr6:701650-702018 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 208 |
| Conread position: | 333-684 |
| Cow position: | chr6:3278254-3277887 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr6:5951540-5951183 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr6:8761604-8761241 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 240 |
| Conread position: | 333-684 |
| Cow position: | chr6:15141478-15141117 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 333-684 |
| Cow position: | chr6:15280846-15280489 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 76, 207 |
| Conread position: | 333-684 |
| Cow position: | chr6:27468955-27469314 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 79 |
| Conread position: | 333-684 |
| Cow position: | chr6:29311192-29311554 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 333-684 |
| Cow position: | chr6:35877020-35876655 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 333-684 |
| Cow position: | chr6:36525739-36526106 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 165 |
| Conread position: | 333-684 |
| Cow position: | chr6:55544630-55544264 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-688 |
| Cow position: | chr6:8201429-8201798 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-688 |
| Cow position: | chr6:26671164-26670797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-690 |
| Cow position: | chr6:331769-331399 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-696 |
| Cow position: | chr6:6566309-6566682 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-696 |
| Cow position: | chr6:28063038-28063413 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 333-699 |
| Cow position: | chr6:1405540-1405160 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 333-699 |
| Cow position: | chr6:2374403-2374778 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 333-699 |
| Cow position: | chr6:2554404-2554784 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 333-699 |
| Cow position: | chr6:13103755-13104136 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 333-699 |
| Cow position: | chr6:27169273-27169655 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr6:28491817-28491436 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr6:57870307-57869925 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-699 |
| Cow position: | chr6:58409213-58408834 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 333-703 |
| Cow position: | chr6:17598580-17598197 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 333-703 |
| Cow position: | chr6:65822430-65822044 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 333-705 |
| Cow position: | chr6:44150861-44150470 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 197 |
| Conread position: | 333-756 |
| Cow position: | chr6:65841286-65841719 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 87 |
| Conread position: | 335-678 |
| Cow position: | chr6:20561410-20561055 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 335-696 |
| Cow position: | chr6:28274687-28275059 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 339-703 |
| Cow position: | chr6:3488698-3488316 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 345-685 |
| Cow position: | chr6:11353444-11353805 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 234 |
| Conread position: | 354-699 |
| Cow position: | chr6:13317766-13317411 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 360-684 |
| Cow position: | chr6:10630191-10630519 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 375-622 |
| Cow position: | chr6:42564682-42564935 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 194 |
| Conread position: | 375-677 |
| Cow position: | chr6:50497720-50497402 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 165 |
| Conread position: | 375-682 |
| Cow position: | chr6:34203253-34203568 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 375-684 |
| Cow position: | chr6:15476025-15476339 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 375-696 |
| Cow position: | chr6:65927678-65928012 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 375-703 |
| Cow position: | chr6:10558907-10558578 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 375-703 |
| Cow position: | chr6:28474450-28474786 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 21 |
| Conread position: | 375-721 |
| Cow position: | chr6:59741310-59740956 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 376-623 |
| Cow position: | chr6:20496443-20496694 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 376-703 |
| Cow position: | chr6:3889740-3889395 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 377-700 |
| Cow position: | chr6:37642142-37642480 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 388-699 |
| Cow position: | chr6:16051641-16051958 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 419-676 |
| Cow position: | chr6:32330993-32330736 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 182, 35 |
| Conread position: | 425-699 |
| Cow position: | chr6:11402843-11403116 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 477-685 |
| Cow position: | chr6:6542816-6543023 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 118, 52 |
| Conread position: | 485-684 |
| Cow position: | chr6:24238924-24239128 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 517-684 |
| Cow position: | chr6:63198182-63198013 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 97 |
Show alignments to all cow chromosomes.