Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120009.5 |
| Conread position: | 1-703 |
| Cow position: | chr8:23766731-23766039 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 452 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 5-258 |
| Cow position: | chr8:24877065-24876824 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 14-289 |
| Cow position: | chr8:38579667-38579392 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 44 |
| Conread position: | 21-335 |
| Cow position: | chr8:39159950-39160272 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 313-684 |
| Cow position: | chr8:9135932-9135561 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 313-689 |
| Cow position: | chr8:44036814-44036432 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 319-526 |
| Cow position: | chr8:38579329-38579114 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 319-684 |
| Cow position: | chr8:15688189-15687818 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 141, 7 |
| Conread position: | 327-535 |
| Cow position: | chr8:39160289-39160490 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 147, 59 |
| Conread position: | 327-684 |
| Cow position: | chr8:24876735-24876373 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 240 |
| Conread position: | 332-590 |
| Cow position: | chr8:12664043-12663776 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 332-684 |
| Cow position: | chr8:32930486-32930850 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 332-698 |
| Cow position: | chr8:53427301-53427676 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 165 |
| Conread position: | 332-706 |
| Cow position: | chr8:47670430-47670822 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 332-728 |
| Cow position: | chr8:45448425-45448841 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 85 |
| Conread position: | 332-762 |
| Cow position: | chr8:46222352-46221914 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 73, 239 |
| Conread position: | 333-643 |
| Cow position: | chr8:42483901-42484227 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-682 |
| Cow position: | chr8:36636568-36636204 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-682 |
| Cow position: | chr8:36637683-36637319 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-682 |
| Cow position: | chr8:59262920-59262555 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-683 |
| Cow position: | chr8:8518606-8518243 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 333-683 |
| Cow position: | chr8:9540516-9540154 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 333-683 |
| Cow position: | chr8:10743651-10743291 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 333-683 |
| Cow position: | chr8:14929018-14928654 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 333-684 |
| Cow position: | chr8:2885718-2886091 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 333-684 |
| Cow position: | chr8:4686369-4686733 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 66, 112 |
| Conread position: | 333-684 |
| Cow position: | chr8:5016156-5016521 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 66, 198 |
| Conread position: | 333-684 |
| Cow position: | chr8:8229810-8229441 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 209 |
| Conread position: | 333-684 |
| Cow position: | chr8:19050461-19050816 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 161 |
| Conread position: | 333-684 |
| Cow position: | chr8:24916363-24915997 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 333-684 |
| Cow position: | chr8:25522372-25522741 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 64, 207 |
| Conread position: | 333-684 |
| Cow position: | chr8:32319573-32319209 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 208 |
| Conread position: | 333-684 |
| Cow position: | chr8:32632049-32631685 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 96 |
| Conread position: | 333-684 |
| Cow position: | chr8:39196242-39195876 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 64, 206 |
| Conread position: | 333-684 |
| Cow position: | chr8:47069833-47069466 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-684 |
| Cow position: | chr8:47662352-47661986 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 333-684 |
| Cow position: | chr8:49214403-49214767 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 162 |
| Conread position: | 333-684 |
| Cow position: | chr8:50289177-50288811 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-684 |
| Cow position: | chr8:50993762-50994128 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 206 |
| Conread position: | 333-690 |
| Cow position: | chr8:23770613-23770981 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 333-696 |
| Cow position: | chr8:8910201-8910575 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 333-696 |
| Cow position: | chr8:10748354-10748728 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 118, 77 |
| Conread position: | 333-699 |
| Cow position: | chr8:1319023-1319400 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 333-699 |
| Cow position: | chr8:8656242-8655863 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 333-699 |
| Cow position: | chr8:9735222-9735602 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 333-699 |
| Cow position: | chr8:11801209-11801586 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 207 |
| Conread position: | 333-699 |
| Cow position: | chr8:22572321-22571941 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 333-703 |
| Cow position: | chr8:38390341-38390727 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 333-704 |
| Cow position: | chr8:1154334-1153947 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 79, 230 |
| Conread position: | 333-712 |
| Cow position: | chr8:25407422-25407816 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 66, 165 |
| Conread position: | 333-715 |
| Cow position: | chr8:44244601-44244204 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 334-589 |
| Cow position: | chr8:19328930-19329197 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 334-684 |
| Cow position: | chr8:3857039-3856674 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 65, 96 |
| Conread position: | 334-699 |
| Cow position: | chr8:27983823-27983440 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 335-684 |
| Cow position: | chr8:45189069-45189424 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 335-743 |
| Cow position: | chr8:2171403-2170980 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 69, 223 |
| Conread position: | 336-683 |
| Cow position: | chr8:61035388-61035029 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 69, 162 |
| Conread position: | 338-582 |
| Cow position: | chr8:46945145-46944895 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 338-684 |
| Cow position: | chr8:3784689-3785050 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 339-704 |
| Cow position: | chr8:47885006-47885394 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 64, 208 |
| Conread position: | 342-703 |
| Cow position: | chr8:33588361-33588733 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 198 |
| Conread position: | 362-690 |
| Cow position: | chr8:8316630-8316296 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 373-696 |
| Cow position: | chr8:45161345-45161021 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 376-592 |
| Cow position: | chr8:44713292-44713059 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 377-696 |
| Cow position: | chr8:24420509-24420178 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 385-684 |
| Cow position: | chr8:13808628-13808941 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 385-684 |
| Cow position: | chr8:25776636-25776333 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 401-699 |
| Cow position: | chr8:8557106-8556793 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 418-670 |
| Cow position: | chr8:61067179-61066917 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 472-684 |
| Cow position: | chr8:47491697-47491492 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 132, 60 |
| Conread position: | 476-699 |
| Cow position: | chr8:6065640-6065413 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 495-703 |
| Cow position: | chr8:9264099-9263888 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 504-696 |
| Cow position: | chr8:51327724-51327923 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 528-682 |
| Cow position: | chr8:16084265-16084422 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.