Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 342-935 |
| Cow position: | chr13:24162555-24163141 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 16 |
| Conread position: | 383-902 |
| Cow position: | chr13:22125198-22125719 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 329 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 389-823 |
| Cow position: | chr13:39984429-39984862 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 389-954 |
| Cow position: | chr13:22125122-22125686 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 389-961 |
| Cow position: | chr13:22124786-22125356 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 389-961 |
| Cow position: | chr13:24162512-24163082 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 9 |
| Conread position: | 390-960 |
| Cow position: | chr13:22125039-22125607 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 343 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 390-960 |
| Cow position: | chr13:24162765-24163333 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 391-957 |
| Cow position: | chr13:56292329-56291775 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 356 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 391-961 |
| Cow position: | chr13:24162429-24162998 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 395-925 |
| Cow position: | chr13:22125379-22125909 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 395-925 |
| Cow position: | chr13:24163105-24163635 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 395-935 |
| Cow position: | chr13:22124875-22125415 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 397-870 |
| Cow position: | chr13:39930680-39931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 397-935 |
| Cow position: | chr13:22125297-22125835 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 319 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 397-935 |
| Cow position: | chr13:24163023-24163561 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 398-770 |
| Cow position: | chr13:24163276-24163648 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 398-902 |
| Cow position: | chr13:24162940-24163445 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 398-954 |
| Cow position: | chr13:24162856-24163412 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 398-960 |
| Cow position: | chr13:22124962-22125523 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 398-960 |
| Cow position: | chr13:24162688-24163249 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 399-960 |
| Cow position: | chr13:39984018-39984578 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 404-789 |
| Cow position: | chr13:56292159-56291773 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 441-961 |
| Cow position: | chr13:39930640-39931157 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 211 |
| Conread position: | 455-960 |
| Cow position: | chr13:56333722-56334235 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 118 |
| Conread position: | 461-907 |
| Cow position: | chr13:39984416-39984862 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 96 |
| Conread position: | 461-908 |
| Cow position: | chr13:39984164-39984611 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 363 |
| Conread position: | 462-907 |
| Cow position: | chr13:39983913-39984358 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 462-960 |
| Cow position: | chr13:39983997-39984494 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 431 |
| Conread position: | 469-960 |
| Cow position: | chr13:22124697-22125187 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 310 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 469-960 |
| Cow position: | chr13:39930584-39931074 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 183 |
| Conread position: | 471-688 |
| Cow position: | chr13:39984678-39984895 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 472-940 |
| Cow position: | chr13:56292674-56292200 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 472-970 |
| Cow position: | chr13:39984259-39984757 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 311 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 365, 352 |
| Conread position: | 478-772 |
| Cow position: | chr13:39984601-39984895 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 501-787 |
| Cow position: | chr13:56334113-56334396 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 219, 209 |
| Conread position: | 501-955 |
| Cow position: | chr13:39984372-39984826 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 502-967 |
| Cow position: | chr13:56333517-56333982 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 78 |
| Conread position: | 504-906 |
| Cow position: | chr13:56292888-56292492 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 134, 34 |
| Conread position: | 505-884 |
| Cow position: | chr13:56333604-56333983 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 511-843 |
| Cow position: | chr13:56333694-56334026 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 156, 146 |
| Conread position: | 520-905 |
| Cow position: | chr13:39983887-39984272 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 366, 371 |
| Conread position: | 547-913 |
| Cow position: | chr13:24162417-24162783 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 208, 204 |
| Conread position: | 595-961 |
| Cow position: | chr13:56292293-56291938 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 218, 95 |
| Conread position: | 637-967 |
| Cow position: | chr13:22124697-22125027 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 637-967 |
| Cow position: | chr13:24162423-24162753 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 105, 117 |
Show alignments to all cow chromosomes.