Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 377-907 |
| Cow position: | chr17:22452366-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 379-962 |
| Cow position: | chr17:22553000-22552421 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 389-955 |
| Cow position: | chr17:22552152-22551587 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 389-955 |
| Cow position: | chr17:22552488-22551923 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 389-957 |
| Cow position: | chr17:22590160-22589593 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 290 |
| Conread position: | 389-960 |
| Cow position: | chr17:22589990-22589421 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 389-961 |
| Cow position: | chr17:22590074-22589503 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 389-964 |
| Cow position: | chr17:22499283-22498709 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 389-971 |
| Cow position: | chr17:22552824-22552243 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 390-961 |
| Cow position: | chr17:41441094-41440524 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 390-970 |
| Cow position: | chr17:41440926-41440347 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 390-973 |
| Cow position: | chr17:41440842-41440260 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 9 |
| Conread position: | 390-973 |
| Cow position: | chr17:41441010-41440428 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 9 |
| Conread position: | 390-976 |
| Cow position: | chr17:41440758-41440175 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 399-971 |
| Cow position: | chr17:22552647-22552075 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 412-947 |
| Cow position: | chr17:22552046-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 431-961 |
| Cow position: | chr17:22473404-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 6 |
| Conread position: | 432-954 |
| Cow position: | chr17:22452226-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 441-955 |
| Cow position: | chr17:22589771-22589257 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-973 |
| Cow position: | chr17:44467687-44468219 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 131 |
| Conread position: | 442-904 |
| Cow position: | chr17:22589854-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-970 |
| Cow position: | chr17:22552268-22551740 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 445-793 |
| Cow position: | chr17:44468027-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 447-960 |
| Cow position: | chr17:41441122-41440610 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 235 |
| Conread position: | 451-973 |
| Cow position: | chr17:44467445-44467967 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-871 |
| Cow position: | chr17:22589583-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 193, 212 |
| Conread position: | 461-947 |
| Cow position: | chr17:22499380-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 446 |
| Conread position: | 462-799 |
| Cow position: | chr17:22498875-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-810 |
| Cow position: | chr17:22551828-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-878 |
| Cow position: | chr17:22552332-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-905 |
| Cow position: | chr17:22552500-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-944 |
| Cow position: | chr17:22499295-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-947 |
| Cow position: | chr17:22553088-22552603 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-953 |
| Cow position: | chr17:22589666-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 307 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 462-961 |
| Cow position: | chr17:22473266-22473765 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-961 |
| Cow position: | chr17:22473350-22473849 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 193 |
| Conread position: | 462-961 |
| Cow position: | chr17:22552836-22552337 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 362 |
| Conread position: | 462-961 |
| Cow position: | chr17:22590254-22589755 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 462-971 |
| Cow position: | chr17:22552668-22552159 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-961 |
| Cow position: | chr17:22552163-22551665 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 217 |
| Conread position: | 463-971 |
| Cow position: | chr17:22553003-22552495 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 126 |
| Conread position: | 467-897 |
| Cow position: | chr17:22473523-22473956 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 468-960 |
| Cow position: | chr17:22499121-22498630 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 0 |
| Conread position: | 469-818 |
| Cow position: | chr17:22452022-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 469-967 |
| Cow position: | chr17:22452358-22451860 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 470-968 |
| Cow position: | chr17:22499035-22498537 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 501-960 |
| Cow position: | chr17:22452410-22451952 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 145 |
| Conread position: | 503-960 |
| Cow position: | chr17:22590297-22589840 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 177 |
| Conread position: | 523-909 |
| Cow position: | chr17:44467433-44467819 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-960 |
| Cow position: | chr17:44467601-44468037 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 223, 217 |
| Conread position: | 523-960 |
| Cow position: | chr17:44467937-44468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 141 |
| Conread position: | 523-967 |
| Cow position: | chr17:44467853-44468297 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-973 |
| Cow position: | chr17:44467685-44468135 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 528-957 |
| Cow position: | chr17:22499395-22498970 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 529-971 |
| Cow position: | chr17:22553105-22552663 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 532-955 |
| Cow position: | chr17:22473174-22473591 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 535-956 |
| Cow position: | chr17:41441118-41440697 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 542-955 |
| Cow position: | chr17:22473262-22473675 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 377, 381 |
| Conread position: | 551-960 |
| Cow position: | chr17:44467377-44467785 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 607-967 |
| Cow position: | chr17:22452388-22452028 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 619-967 |
| Cow position: | chr17:41441118-41440770 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 627-971 |
| Cow position: | chr17:22590257-22589913 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 636-961 |
| Cow position: | chr17:44467378-44467703 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-955 |
| Cow position: | chr17:22553131-22552847 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 696-971 |
| Cow position: | chr17:22452382-22452108 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 698-973 |
| Cow position: | chr17:44467355-44467631 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 708-971 |
| Cow position: | chr17:22590260-22589997 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 752-961 |
| Cow position: | chr17:22452411-22452202 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 787-972 |
| Cow position: | chr17:41441118-41440933 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 132, 136 |
Show alignments to all cow chromosomes.