Cow genome map

Conread name: Ss1.1-LyN1-MLN01G120024.5

Conread position: 377-955
Cow position: chr19:20677799-20678377 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 354
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 13, 23

Conread position: 380-971
Cow position: chr19:14960122-14959547 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 370
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 20

Conread position: 384-960
Cow position: chr19:23649831-23650404 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 389-694
Cow position: chr19:14940773-14941077 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 14

Conread position: 389-789
Cow position: chr19:23650087-23650486 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 11

Conread position: 389-793
Cow position: chr19:23597310-23597713 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 389-863
Cow position: chr19:23650003-23650476 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 10

Conread position: 389-872
Cow position: chr19:20678232-20678714 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 10

Conread position: 389-872
Cow position: chr19:23614637-23615117 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 389-945
Cow position: chr19:14940521-14941076 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 389-946
Cow position: chr19:23649583-23650139 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 10

Conread position: 389-955
Cow position: chr19:14940353-14940918 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 8

Conread position: 389-961
Cow position: chr19:23649751-23650322 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 8

Conread position: 390-972
Cow position: chr19:23649500-23650081 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 391-967
Cow position: chr19:14940186-14940762 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 399-874
Cow position: chr19:20635511-20635036 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 259

Conread position: 399-961
Cow position: chr19:14940446-14941007 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 558, 0

Conread position: 399-962
Cow position: chr19:14940278-14940840 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 399-970
Cow position: chr19:23649676-23650247 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 411-685
Cow position: chr19:43569922-43569652 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 32

Conread position: 412-947
Cow position: chr19:23613735-23614270 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 417-955
Cow position: chr19:23613657-23614194 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 25

Conread position: 426-914
Cow position: chr19:14948486-14947998 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 87

Conread position: 431-875
Cow position: chr19:23597268-23597711 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 6

Conread position: 432-800
Cow position: chr19:20635393-20635026 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 148, 5

Conread position: 432-947
Cow position: chr19:23614008-23614522 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 432-955
Cow position: chr19:23613838-23614362 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 492

Conread position: 434-961
Cow position: chr19:20677520-20678047 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 324
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 162, 140

Conread position: 437-961
Cow position: chr19:23614516-23615040 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 232

Conread position: 438-946
Cow position: chr19:23597190-23597698 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 489

Conread position: 441-875
Cow position: chr19:14959573-14959148 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 266
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 267, 0

Conread position: 441-947
Cow position: chr19:23649970-23650476 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 441-955
Cow position: chr19:23649466-23649980 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 441-961
Cow position: chr19:20677443-20677963 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 325
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 19, 23

Conread position: 441-961
Cow position: chr19:20678031-20678551 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 300

Conread position: 441-961
Cow position: chr19:23613512-23614032 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 37

Conread position: 441-961
Cow position: chr19:23614436-23614956 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 238

Conread position: 442-909
Cow position: chr19:23613933-23614400 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 442-940
Cow position: chr19:23614605-23615103 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 216

Conread position: 442-961
Cow position: chr19:23614101-23614620 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 442-967
Cow position: chr19:23596945-23597467 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 444-947
Cow position: chr19:14939987-14940490 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 451-955
Cow position: chr19:23649392-23649896 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 454-961
Cow position: chr19:14960466-14959961 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 0

Conread position: 457-907
Cow position: chr19:14960211-14959765 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 457-972
Cow position: chr19:23596876-23597388 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 156

Conread position: 461-807
Cow position: chr19:14959637-14959292 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 462-821
Cow position: chr19:14916064-14916419 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 233, 73

Conread position: 462-905
Cow position: chr19:20678220-20678663 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 111

Conread position: 462-906
Cow position: chr19:20677632-20678076 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 462-947
Cow position: chr19:14940089-14940574 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 462-960
Cow position: chr19:20678136-20678633 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 39

Conread position: 462-960
Cow position: chr19:23613449-23613946 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 111

Conread position: 462-960
Cow position: chr19:23614205-23614702 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 362

Conread position: 462-961
Cow position: chr19:23613617-23614116 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 462-961
Cow position: chr19:43570207-43569710 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 473, 0

Conread position: 462-972
Cow position: chr19:14960374-14959866 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 224

Conread position: 463-874
Cow position: chr19:14959224-14958819 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 463-947
Cow position: chr19:43570364-43569890 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 463-955
Cow position: chr19:23597047-23597539 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 467-795
Cow position: chr19:20635275-20634950 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 28

Conread position: 467-947
Cow position: chr19:20635527-20635047 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 198

Conread position: 467-961
Cow position: chr19:23614294-23614788 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 457

Conread position: 468-872
Cow position: chr19:14959712-14959310 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 23, 36

Conread position: 468-960
Cow position: chr19:14960284-14959796 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 134

Conread position: 469-960
Cow position: chr19:14940180-14940670 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 361

Conread position: 469-961
Cow position: chr19:23597137-23597629 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 493-905
Cow position: chr19:23613396-23613808 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 164

Conread position: 501-905
Cow position: chr19:20635745-20635341 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 255
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 30, 45

Conread position: 501-927
Cow position: chr19:20677839-20678265 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 359

Conread position: 506-972
Cow position: chr19:43570247-43569781 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 507-947
Cow position: chr19:23649363-23649804 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 417

Conread position: 510-961
Cow position: chr19:14948485-14948036 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 85

Conread position: 511-907
Cow position: chr19:20677765-20678161 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 515-947
Cow position: chr19:14959256-14958830 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 278
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 356, 137

Conread position: 519-907
Cow position: chr19:23614430-23614818 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 222

Conread position: 519-947
Cow position: chr19:23649292-23649720 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 309

Conread position: 522-970
Cow position: chr19:14959814-14959380 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 290
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 218, 102

Conread position: 523-961
Cow position: chr19:20635555-20635118 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 140

Conread position: 523-961
Cow position: chr19:20635639-20635201 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 328

Conread position: 523-961
Cow position: chr19:20677441-20677878 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 268
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 145, 156

Conread position: 531-905
Cow position: chr19:23613350-23613724 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 553-955
Cow position: chr19:14959711-14959311 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 103, 59

Conread position: 598-960
Cow position: chr19:23596849-23597207 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 234
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 236, 183

Conread position: 602-973
Cow position: chr19:14959253-14958888 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 317, 134

Conread position: 603-967
Cow position: chr19:23649292-23649656 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 316, 320

Conread position: 612-955
Cow position: chr19:14939987-14940330 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 615-960
Cow position: chr19:23613350-23613694 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 308, 301

Conread position: 679-967
Cow position: chr19:14948484-14948197 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 183
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 696-957
Cow position: chr19:14939987-14940248 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 124, 133

Conread position: 697-971
Cow position: chr19:20635633-20635359 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 174
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 224, 212

Show alignments to all cow chromosomes.