Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 389-693 |
| Cow position: | chr2:82800141-82800444 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 389-871 |
| Cow position: | chr2:78755195-78755674 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 389-960 |
| Cow position: | chr2:82799553-82800122 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 389-961 |
| Cow position: | chr2:82799805-82800375 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 389-967 |
| Cow position: | chr2:82799721-82800298 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 391-960 |
| Cow position: | chr2:82799470-82800038 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 0 |
| Conread position: | 391-961 |
| Cow position: | chr2:5875154-5874585 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 398-947 |
| Cow position: | chr2:82799897-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-961 |
| Cow position: | chr2:5875063-5874501 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 399-967 |
| Cow position: | chr2:86465554-86466122 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 411-788 |
| Cow position: | chr2:48689410-48689033 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 422-874 |
| Cow position: | chr2:48689481-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 329, 20 |
| Conread position: | 426-961 |
| Cow position: | chr2:82799421-82799956 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 395 |
| Conread position: | 434-953 |
| Cow position: | chr2:78755155-78755672 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 182 |
| Conread position: | 435-967 |
| Cow position: | chr2:86465338-86465870 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 438-970 |
| Cow position: | chr2:82799685-82800217 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 481, 485 |
| Conread position: | 441-940 |
| Cow position: | chr2:78755830-78756328 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 214, 284 |
| Conread position: | 441-961 |
| Cow position: | chr2:78754826-78755345 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 308 |
| Conread position: | 441-961 |
| Cow position: | chr2:78755662-78756183 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 372, 452 |
| Conread position: | 451-875 |
| Cow position: | chr2:78754266-78754688 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 461-878 |
| Cow position: | chr2:78755600-78756015 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 462-955 |
| Cow position: | chr2:78754193-78754684 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 89 |
| Conread position: | 463-875 |
| Cow position: | chr2:5874662-5874250 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 463-925 |
| Cow position: | chr2:48689525-48689064 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 116 |
| Conread position: | 463-961 |
| Cow position: | chr2:5875166-5874669 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 269, 278 |
| Conread position: | 467-884 |
| Cow position: | chr2:78754117-78754529 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 468-947 |
| Cow position: | chr2:78755105-78755582 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 233 |
| Conread position: | 471-884 |
| Cow position: | chr2:48689598-48689189 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 472-739 |
| Cow position: | chr2:86465963-86466228 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 126 |
| Conread position: | 478-967 |
| Cow position: | chr2:86465129-86465618 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 124 |
| Conread position: | 502-971 |
| Cow position: | chr2:78754567-78755020 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 522-907 |
| Cow position: | chr2:86465761-86466146 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 172, 176 |
| Conread position: | 523-813 |
| Cow position: | chr2:5874686-5874396 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 523-961 |
| Cow position: | chr2:5874856-5874417 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 523-961 |
| Cow position: | chr2:78754824-78755262 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-967 |
| Cow position: | chr2:86465006-86465450 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 96 |
| Conread position: | 524-970 |
| Cow position: | chr2:86465091-86465537 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 531-899 |
| Cow position: | chr2:86465266-86465634 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 533-824 |
| Cow position: | chr2:86465940-86466229 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 153, 149 |
| Conread position: | 533-967 |
| Cow position: | chr2:5875180-5874746 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 270, 274 |
| Conread position: | 624-967 |
| Cow position: | chr2:82799451-82799794 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 204 |
Show alignments to all cow chromosomes.